RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PPP6CO00743 305 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM11P17152 192 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 THBS4P35443 961 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF93P35789 620 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SLC6A12P48065 614 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 GLYATL3Q5SZD4 288 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MEX3BQ6ZN04 569 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 FJX1Q86VR8 437 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 RCC2Q9P258 522 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SLC5A10A0PJK1 596 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SNCGO76070 127 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 IGHG1P01857 330 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PGA4P0DJD7 388 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PGA5P0DJD9 388 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 HOXA6P31267 233 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 OR1D2P34982 312 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 EXT1Q16394 746 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MUC20Q8N307 709 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ZCCHC10Q8TBK6 192 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 LMX1AQ8TE12 382 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MS4A3Q96HJ5 214 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 GGACTQ9BVM4 153 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 YIPF1Q9Y548 306 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 NSG1A0A0A6YYJ2 146 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 LOC102723971A0A1B0GUV8 181 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CTNSO60931 367 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CD8AP01732 235 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CT45A6P0DMU7 189 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CT45A5P0DMU8 189 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CT45A7P0DMV0 189 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 HIST1H1TP22492 207 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 TEAD1P28347 426 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CT45A1Q5HYN5 189 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MRGPRGQ86SM5 289 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PLPP6Q8IY26 295 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PUSL1Q8N0Z8 303 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CT45A3Q8NHU0 189 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 WDR34Q96EX3 536 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 NEIL1Q96FI4 390 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 C20orf24Q9BUV8 137 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 M0QZQ0 153 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 LEFTY1O75610 366 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 OR5G3P0C626 314 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ADCYAP1R1P41586 468 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 TCL1AP56279 114 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 RPS24P62847 133 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 RPS26P62854 115 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 RPEL1Q2QD12 228 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 FAM69BQ5VUD6 431 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 LIPNQ5VXI9 398 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 C11orf42Q8N5U0 333 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 DTX3Q8N9I9 347 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 OR10G6Q8NH81 332 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PP6455Q8WZ26 134 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 OPN3Q9H1Y3 402 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CUTCQ9NTM9 273 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 NAGKQ9UJ70 344 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PADI3Q9ULW8 664 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 AUP1Q9Y679 476 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SLCO2B1O94956 709 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 FABP2P12104 132 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 IFITM3Q01628 133 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 FPGSQ05932 587 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CRMP1Q14194 572 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CTSL3PQ5NE16 218 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 Q6ZPB1 254 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 DGAT2L6Q6ZPD8 337 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 OR11H7Q8NGC8 314 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 NXPE3Q969Y0 559 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PTPN18Q99952 460 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 NAV1Q8NEY1 1877 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ZFP92A6NM28 416 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 TNFRSF1BP20333 461 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 BRS3P32247 399 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 GABRA4P48169 554 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 RAB7AP51149 207 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ADPRHP54922 357 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 KRTDAPP60985 99 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ACTR1AP61163 376 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PLCXD2Q0VAA5 305 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 RAB6CQ53S08 254 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM97Q5BJF2 176 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PRAMEF18Q5VWM3 479 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 VITQ6UXI7 678 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM182Q6ZP80 229 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CYB561A3Q8NBI2 242 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SLC46A2Q9BY10 475 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 RAB6CQ9H0N0 254 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CHODLQ9H9P2 273 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 GCM1Q9NP62 436 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 UPK1AO00322 258 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 RPS4Y1P22090 263 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 TNFSF4P23510 183 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ACVRL1P37023 503 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 DSC1Q08554 894 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CATSPERDQ86XM0 798 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SLC25A43Q8WUT9 341 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 FGF14Q92915 247 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MS4A6EQ96DS6 147 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms