RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 OR8G5Q8NG78 346 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 OR8B3Q8NGG8 313 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 OR13C2Q8NGS9 318 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 OR13G1Q8NGZ3 307 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 OR8B2Q96RD0 313 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 PRDM13Q9H4Q3 707 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 C1RLQ9NZP8 487 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 RHCGQ9UBD6 479 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 GRHPRQ9UBQ7 328 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 ADAM18Q9Y3Q7 739 aa16.19■□□□□ 0.18
CLN3-262ENST00000637699 EFCAB9A8MZ26 197 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 DBHP09172 617 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 RPL4P36578 427 aaKnown RBP16.18■□□□□ 0.18
CLN3-262ENST00000637699 YAP1P46937 504 aaKnown RBP16.18■□□□□ 0.18
CLN3-262ENST00000637699 FGF12P61328 243 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 RELBQ01201 579 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 ZNF404Q494X3 552 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 LRRC23Q53EV4 343 aaPredicted RBP16.18■□□□□ 0.18
CLN3-262ENST00000637699 GPR157Q5UAW9 335 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 NLRC3Q7RTR2 1065 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 FITM2Q8N6M3 262 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 PRRC1Q96M27 445 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 Q96M85 177 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 ZNF582Q96NG8 517 aaPredicted RBP16.18■□□□□ 0.18
CLN3-262ENST00000637699 SH3GL1Q99961 368 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 CDADC1Q9BWV3 514 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 CHIAQ9BZP6 476 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 RERGLQ9H628 205 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 ASH2LQ9UBL3 628 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 CLN8Q9UBY8 286 aa16.18■□□□□ 0.18
CLN3-262ENST00000637699 OR6C6A6NF89 314 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 LRRC30A6NM36 301 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 F5H5P2 479 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 M0QZ24 198 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 XKRYO14609 159 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 TROVE2P10155 538 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLN3-262ENST00000637699 SELEP16581 610 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 IFNA8P32881 189 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 PRKCDQ05655 676 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 AQP6Q13520 282 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 RUSC1-AS1Q66K80 236 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 LYPD2Q6UXB3 125 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 FBXW12Q6X9E4 464 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 Q6YL49 198 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 PCYOX1LQ8NBM8 494 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 BHLHE23Q8NDY6 225 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 OR5L1Q8NGL2 311 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 OR1F12Q8NHA8 337 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 C10orf82Q8WW14 230 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 CITED1Q99966 193 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 SAR1AQ9NR31 198 aa16.17■□□□□ 0.18
CLN3-262ENST00000637699 CLPSL1A2RUU4 121 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 MLNRO43193 412 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 CTLA4P16410 223 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 PMELP40967 661 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 SLC9A3P48764 834 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 KLF10Q13118 480 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 ANKDD1AQ495B1 522 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 CCDC92Q53HC0 331 aaPredicted RBP16.16■□□□□ 0.18
CLN3-262ENST00000637699 MESTQ5EB52 335 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 WDR25Q64LD2 544 aaPredicted RBP16.16■□□□□ 0.18
CLN3-262ENST00000637699 ERICH5Q6P6B1 374 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 C1orf87Q8N0U7 546 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 C19orf18Q8NEA5 215 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 OR8J3Q8NGG0 315 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 RASD2Q96D21 266 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 ZNF583Q96ND8 569 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 PKP2Q99959 881 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 PCGF1Q9BSM1 259 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 MMP27Q9H306 513 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 WDR76Q9H967 626 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 NOX4Q9NPH5 578 aa16.16■□□□□ 0.18
CLN3-262ENST00000637699 TEX13CA0A0J9YWL9 993 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 PRSS37A4D1T9 235 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 J3KTA2 159 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 FXYD1O00168 92 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 RER1O15258 196 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 NDUFA7O95182 113 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 CD14P08571 375 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 KDELR2P33947 212 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 GPR4P46093 362 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 RGS6P49758 472 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 KRTAP10-3P60369 221 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 ZNF181Q2M3W8 571 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 RHOUQ7L0Q8 258 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 ZNF570Q96NI8 536 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 SLC30A2Q9BRI3 323 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 FNDC11Q9BVV2 318 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 COA3Q9Y2R0 106 aaPredicted RBP16.15■□□□□ 0.18
CLN3-262ENST00000637699 SNX13Q9Y5W8 968 aa16.15■□□□□ 0.18
CLN3-262ENST00000637699 C22orf46C9J442 243 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 TIMM23O14925 209 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 AHCYL1O43865 530 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 SLC16A7O60669 478 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 HLA-DPB1P04440 258 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 SFTPBP07988 381 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 MELTFP08582 738 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 IRF2P14316 349 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 ZNF26P17031 533 aaPredicted RBP16.14■□□□□ 0.17
CLN3-262ENST00000637699 BPIFB3P59826 476 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms