RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TIPARPQ7Z3E1 657 aaKnown RBP8.14□□□□□ -1.11
VCL-206ENST00000623461 TMEM123Q8N131 208 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 MARCH1Q8TCQ1 289 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 NUDCD2Q8WVJ2 157 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 TCTN2Q96GX1 697 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 ZNF2Q9BSG1 426 aaPredicted RBP8.14□□□□□ -1.11
VCL-206ENST00000623461 CLDND1Q9NY35 253 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 UPK1AO00322 258 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 LAMTOR5O43504 91 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 DUX1O43812 170 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 GALR3O60755 368 aaPredicted RBP8.14□□□□□ -1.11
VCL-206ENST00000623461 ABHD16AO95870 558 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 LIM2P55344 173 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 ZP2Q05996 745 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 FAM209BQ5JX69 171 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 ABLIM2Q6H8Q1 611 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 LYPD8Q6UX82 237 aa8.14□□□□□ -1.11
VCL-206ENST00000623461 PARS2Q7L3T8 475 aaKnown RBP8.14□□□□□ -1.11
VCL-206ENST00000623461 BSCL2Q96G97 398 aaPredicted RBP8.14□□□□□ -1.11
VCL-206ENST00000623461 NOL4LQ96MY1 436 aaPredicted RBP8.14□□□□□ -1.11
VCL-206ENST00000623461 NXT1Q9UKK6 140 aaKnown RBP8.14□□□□□ -1.11
VCL-206ENST00000623461 HHEXQ03014 270 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ETFRF1Q6IPR1 90 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ABHD17CQ6PCB6 329 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 OR5L1Q8NGL2 311 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ZNF596Q8TC21 504 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 PIGCQ92535 297 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 Q96M85 177 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 UBL7Q96S82 380 aaPredicted RBP8.13□□□□□ -1.11
VCL-206ENST00000623461 ADOQ96SZ5 270 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 TMPRSS13Q9BYE2 586 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 GPR160Q9UJ42 338 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ASB1Q9Y576 335 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ACTL6BO94805 426 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 IGHEP01854 428 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 APLNRP35414 380 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 SELENOPP49908 381 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ZNF528Q3MIS6 628 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 OR4F5Q8NH21 305 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 TSACCQ96A04 125 aaPredicted RBP8.13□□□□□ -1.11
VCL-206ENST00000623461 OR4F4Q96R69 305 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 SERTM1A2A2V5 107 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 HEPACAM2A8MVW5 462 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 SLC17A2O00624 439 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 CRYBA1P05813 215 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 HBQ1P09105 142 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 RPL27P61353 136 aaKnown RBP8.13□□□□□ -1.11
VCL-206ENST00000623461 IL10RAQ13651 578 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ETFDHQ16134 617 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 TCEAL8Q8IYN2 117 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 OR8U1Q8NH10 309 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 THAP3Q8WTV1 239 aaPredicted RBP8.13□□□□□ -1.11
VCL-206ENST00000623461 DERL3Q96Q80 235 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 MYOTQ9UBF9 498 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 HS3ST2Q9Y278 367 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 A8MVM7 634 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 PLA2G10O15496 165 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ARHGEF39Q8N4T4 335 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 SLC38A9Q8NBW4 561 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 GCDHQ92947 438 aaPredicted RBP8.13□□□□□ -1.11
VCL-206ENST00000623461 MIXL1Q9H2W2 232 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.13□□□□□ -1.11
VCL-206ENST00000623461 LOC107986453A0A1B0GWG9 222 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 CLN5O75503 358 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 SLC35E2P0CK97 266 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 RABIFP47224 123 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 GABREP78334 506 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 IRF3Q14653 427 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 DCXRQ7Z4W1 244 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 PRR22Q8IZ63 422 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 SUMF1Q8NBK3 374 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 FAM210BQ96KR6 192 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 LPAR4Q99677 370 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 JAM3Q9BX67 310 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 GPR173Q9NS66 373 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ZNF320A2RRD8 509 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ATF1P18846 271 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 GABRA2P47869 451 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 GSK3AP49840 483 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 CATSPERDQ86XM0 798 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 TCTEX1D1Q8N7M0 179 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ZNF383Q8NA42 475 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 ZNF845Q96IR2 970 aaPredicted RBP8.13□□□□□ -1.11
VCL-206ENST00000623461 SLC5A6Q9Y289 635 aa8.13□□□□□ -1.11
VCL-206ENST00000623461 KIR2DS1A0A191URI9 304 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 PTBP3O95758 552 aaKnown RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 RPLP1P05386 114 aaKnown RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 IL2RGP31785 369 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 KIR2DS4P43632 304 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 HABP2Q14520 560 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 KIR2DS1Q14954 304 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 ZNF66Q6ZN08 573 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 MOB1BQ7L9L4 216 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 LHX4Q969G2 390 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 SDF2Q99470 211 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 PHIPQ8WWQ0 1821 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 QDPRP09417 244 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 FPR2P25090 351 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 PTTG1IPP53801 180 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms