RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 EXT1Q16394 746 aa11.03□□□□□ -0.64
CIITA-212ENST00000618207 PCGF3Q3KNV8 242 aa11.03□□□□□ -0.64
CIITA-212ENST00000618207 PEAR1Q5VY43 1037 aaPredicted RBP11.03□□□□□ -0.64
CIITA-212ENST00000618207 SHEQ5VZ18 495 aa11.03□□□□□ -0.64
CIITA-212ENST00000618207 RAB11FIP2Q7L804 512 aa11.03□□□□□ -0.64
CIITA-212ENST00000618207 ZNF454Q8N9F8 522 aa11.03□□□□□ -0.64
CIITA-212ENST00000618207 RAB40AQ8WXH6 277 aa11.03□□□□□ -0.64
CIITA-212ENST00000618207 ZNF385AQ96PM9 386 aaKnown RBP11.03□□□□□ -0.64
CIITA-212ENST00000618207 ZNF700Q9H0M5 742 aa11.03□□□□□ -0.64
CIITA-212ENST00000618207 PROK2Q9HC23 129 aa11.03□□□□□ -0.64
CIITA-212ENST00000618207 AKAP7Q9P0M2 348 aaPredicted RBP11.03□□□□□ -0.64
CIITA-212ENST00000618207 GDF2Q9UK05 429 aaPredicted RBP11.03□□□□□ -0.64
CIITA-212ENST00000618207 FREM1Q5H8C1 2179 aa11.02□□□□□ -0.64
CIITA-212ENST00000618207 TNFSF11O14788 317 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 ARPC1BO15143 372 aaKnown RBP11.02□□□□□ -0.65
CIITA-212ENST00000618207 FABP7O15540 132 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 CTAG2O75638 210 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 HPXP02790 462 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 TRAPPC2P0DI81 140 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 TRAPPC2BP0DI82 140 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 TRA2AQ13595 282 aaKnown RBP eCLIP11.02□□□□□ -0.65
CIITA-212ENST00000618207 SLC25A25Q6KCM7 469 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 TMPPEQ6ZT21 453 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.02□□□□□ -0.65
CIITA-212ENST00000618207 CCDC28AQ8IWP9 274 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 NOXO1Q8NFA2 376 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 OR11H7Q8NGC8 314 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 OR4D10Q8NGI6 311 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 OR6N1Q8NGY5 312 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 OR2AJ1Q8NGZ0 328 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 OR51E1Q8TCB6 317 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 MRPL13Q9BYD1 178 aaKnown RBP11.02□□□□□ -0.65
CIITA-212ENST00000618207 C20orf85Q9H1P6 137 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 OR51J1Q9H342 316 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 C1orf198Q9H425 327 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 TCFL5Q9UL49 500 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 NUBP2Q9Y5Y2 271 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 TMEM272A0A1B0GTI8 110 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 TRAPPC6AO75865 159 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 TOXO94900 526 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 ALDOBP05062 364 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 ACSM4P0C7M7 580 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 STARP49675 285 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 Q0VFX4 171 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 MAB21L1Q13394 359 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 ST3GAL2Q16842 350 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 CLVS2Q5SYC1 327 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 FDX2Q6P4F2 183 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 FADS6Q8N9I5 356 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 STMN3Q9NZ72 180 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 CYB5R1Q9UHQ9 305 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 LHFPL6Q9Y693 200 aa11.02□□□□□ -0.65
CIITA-212ENST00000618207 HOXB1P14653 301 aaPredicted RBP11.01□□□□□ -0.65
CIITA-212ENST00000618207 STOMP27105 288 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 HTR2CP28335 458 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 POLR2GP62487 172 aaKnown RBP eCLIP11.01□□□□□ -0.65
CIITA-212ENST00000618207 LINC00303Q3SY05 128 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 SLC25A53Q5H9E4 307 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 THEM4Q5T1C6 240 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 ALKBH2Q6NS38 261 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 BAIAP2L2Q6UXY1 529 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 RNF144BQ7Z419 303 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 OR13C9Q8NGT0 318 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 CT55Q8WUE5 264 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 RNF133Q8WVZ7 376 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 FAM71F1Q96KD3 344 aaPredicted RBP11.01□□□□□ -0.65
CIITA-212ENST00000618207 OXGR1Q96P68 337 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 SEC22CQ9BRL7 303 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 IGLV3-32A0A0A0MS00 114 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 GGT3PA6NGU5 568 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 M0R296 226 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 SLC17A2O00624 439 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 SYT7O43581 403 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 GSTZ1O43708 216 aaPredicted RBP11.01□□□□□ -0.65
CIITA-212ENST00000618207 ZIC3O60481 467 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 SRSF10O75494 262 aaKnown RBP11.01□□□□□ -0.65
CIITA-212ENST00000618207 GLSO94925 669 aaPredicted RBP11.01□□□□□ -0.65
CIITA-212ENST00000618207 TTRP02766 147 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 ABOP16442 354 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 FAPQ12884 760 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 CDK10Q15131 360 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 GLT8D1Q68CQ7 371 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 PLXDC2Q6UX71 529 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 NAA40Q86UY6 237 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 UXS1Q8NBZ7 420 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 OR6S1Q8NH40 331 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 ADAT3Q96EY9 351 aaPredicted RBP11.01□□□□□ -0.65
CIITA-212ENST00000618207 RBM24Q9BX46 236 aaKnown RBP11.01□□□□□ -0.65
CIITA-212ENST00000618207 CHIAQ9BZP6 476 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 PBOV1Q9GZY1 135 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 GHITMQ9H3K2 345 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 DIABLOQ9NR28 239 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 HSPB11Q9Y547 144 aa11.01□□□□□ -0.65
CIITA-212ENST00000618207 ACOT7O00154 380 aa11□□□□□ -0.65
CIITA-212ENST00000618207 RBBP9O75884 186 aa11□□□□□ -0.65
CIITA-212ENST00000618207 CSN2P05814 226 aa11□□□□□ -0.65
CIITA-212ENST00000618207 RFPL3SP0C7P2 107 aa11□□□□□ -0.65
CIITA-212ENST00000618207 LIFP15018 202 aa11□□□□□ -0.65
CIITA-212ENST00000618207 ANXA7P20073 488 aaKnown RBP11□□□□□ -0.65
CIITA-212ENST00000618207 EIF1P41567 113 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms