RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CAB39Q9Y376 341 aaPredicted RBP12.47□□□□□ -0.41
UPF1-211ENST00000600868 IGHV1-18A0A0C4DH31 117 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 TMEM129A0AVI4 362 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 METTL15A6NJ78 407 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 MT-ND2P03891 347 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 KRT8P05787 483 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 CELA3BP08861 270 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 H2BFMP0C1H6 154 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 CECR9P0C854 216 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 CRYGSP22914 178 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 APEX1P27695 318 aaKnown RBP12.46□□□□□ -0.41
UPF1-211ENST00000600868 OTX1P32242 354 aaPredicted RBP12.46□□□□□ -0.41
UPF1-211ENST00000600868 DCTDP32321 178 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 APLNRP35414 380 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 HTR5AP47898 357 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 ZNF83P51522 516 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 SNTB1Q13884 538 aaKnown RBP12.46□□□□□ -0.41
UPF1-211ENST00000600868 IRF3Q14653 427 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 TAF13Q15543 124 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 RSPO1Q2MKA7 263 aaPredicted RBP12.46□□□□□ -0.41
UPF1-211ENST00000600868 LRRN1Q6UXK5 716 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 SPATC1Q76KD6 591 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.46□□□□□ -0.41
UPF1-211ENST00000600868 DMRTC2Q8IXT2 367 aaPredicted RBP12.46□□□□□ -0.41
UPF1-211ENST00000600868 SYS1Q8N2H4 156 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 SLC30A7Q8NEW0 376 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 OR1J2Q8NGS2 313 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 OR52N1Q8NH53 320 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 MS4A3Q96HJ5 214 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 POM121L2Q96KW2 1035 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 DCLRE1CQ96SD1 692 aaKnown RBP12.46□□□□□ -0.41
UPF1-211ENST00000600868 KCNJ15Q99712 375 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 TTTY10Q9BZA0 68 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 CCDC90BQ9GZT6 254 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 MRM2Q9UI43 246 aaKnown RBP12.46□□□□□ -0.41
UPF1-211ENST00000600868 IKZF2Q9UKS7 526 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 ERGIC3Q9Y282 383 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 LRP12Q9Y561 859 aa12.46□□□□□ -0.41
UPF1-211ENST00000600868 LOC100509620A0A075B734 347 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 M0R1B8 84 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 PSMD9O00233 223 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 ABHD16AO95870 558 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 APOC1P02654 83 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 TACSTD2P09758 323 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 PTAFRP25105 342 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 KIR2DL3P43628 341 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 GDI2P50395 445 aaKnown RBP12.45□□□□□ -0.42
UPF1-211ENST00000600868 RIDAP52758 137 aaKnown RBP12.45□□□□□ -0.42
UPF1-211ENST00000600868 OR12D2P58182 307 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 TBC1D28Q2M2D7 210 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 ALKBH2Q6NS38 261 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 ZNF773Q6PK81 442 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 TMPRSS11AQ6ZMR5 421 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 MYPOPQ86VE0 399 aaPredicted RBP12.45□□□□□ -0.42
UPF1-211ENST00000600868 KLHL36Q8N4N3 616 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 NANOGP1Q8N7R0 232 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 FAM222BQ8WU58 562 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 SPTSSAQ969W0 71 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 C4orf36Q96KX1 117 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 SLC24A3Q9HC58 644 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 PRR14LQ5THK1 2151 aa12.45□□□□□ -0.42
UPF1-211ENST00000600868 C5orf49A4QMS7 147 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 PRSS44E7EML9 344 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 F5H5K5 113 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 J3QLW9 94 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 CASKO14936 926 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 MYL12BO14950 172 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 MAGEB4O15481 346 aaPredicted RBP12.44□□□□□ -0.42
UPF1-211ENST00000600868 MT-ND5P03915 603 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 DBHP09172 617 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 ZNF19P17023 458 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 CD40P25942 277 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 HSD11B1P28845 292 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 CDH15P55291 814 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 TPTEP56180 551 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 GALK2Q01415 458 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 NAAAQ02083 359 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 MRPL28Q13084 256 aaKnown RBP12.44□□□□□ -0.42
UPF1-211ENST00000600868 TP53I3Q53FA7 332 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 LIPNQ5VXI9 398 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 TMEM108Q6UXF1 575 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 FAM220AQ7Z4H9 259 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 SPARTQ8N0X7 666 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 SVOPQ8N4V2 548 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 YIPF7Q8N8F6 280 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 ZNF485Q8NCK3 441 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 SLC7A6Q92536 515 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 MND1Q9BWT6 205 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 ISG20L2Q9H9L3 353 aaKnown RBP12.44□□□□□ -0.42
UPF1-211ENST00000600868 CRIM1Q9NZV1 1036 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 GNG8Q9UK08 70 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 SNX5Q9Y5X3 404 aa12.44□□□□□ -0.42
UPF1-211ENST00000600868 ADGRG4Q8IZF6 3080 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 A0A087WXM4 84 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 DPRXA6NFQ7 191 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 ACOD1A6NK06 481 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 M0R135 149 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 ICMTO60725 284 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 CLDN1O95832 211 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 ACSM4P0C7M7 580 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms