RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 PPIAL4FP0DN26 164 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 HIST1H1CP16403 213 aaKnown RBP13.36□□□□□ -0.27
VRK3-221ENST00000600284 NOS3P29474 1203 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 RRM2P31350 389 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 GSSP48637 474 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 CENPAP49450 140 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 MNAT1P51948 309 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 HMGA2P52926 109 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 COX10Q12887 443 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 TSPAN31Q12999 210 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 SLC36A3Q495N2 470 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 SLC27A4Q6P1M0 643 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 LEG1Q6P5S2 330 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 Q6ZR03 302 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 ZBTB46Q86UZ6 589 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 OR6V1Q8N148 313 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 LINC00471Q8N535 108 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 ZNF283Q8N7M2 679 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 OR2Z1Q8NG97 314 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 GNPDA2Q8TDQ7 276 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 SLC7A6Q92536 515 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 NMNAT3Q96T66 252 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 IFT27Q9BW83 186 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 TMPRSS13Q9BYE2 586 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 SRA1Q9HD15 236 aaKnown RBP13.36□□□□□ -0.27
VRK3-221ENST00000600284 TMEM106BQ9NUM4 274 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 ARL8BQ9NVJ2 186 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 LHFPL6Q9Y693 200 aa13.36□□□□□ -0.27
VRK3-221ENST00000600284 ISPDA4D126 451 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 IFNL4K9M1U5 179 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 IGHV2-70P01814 119 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 MSX2P35548 267 aaPredicted RBP13.35□□□□□ -0.27
VRK3-221ENST00000600284 GNGT1P63211 74 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 TMEM155Q4W5P6 130 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 SPRNQ5BIV9 151 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 DCAF12L2Q5VW00 463 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 RPL13AP3Q6NVV1 102 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 C1orf229Q6ZS94 237 aaPredicted RBP13.35□□□□□ -0.27
VRK3-221ENST00000600284 USP43Q70EL4 1123 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 C1QL2Q7Z5L3 287 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 ZDHHC21Q8IVQ6 265 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 DEFB107AQ8IZN7 70 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 SPICQ8N5J4 248 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 SLC26A10Q8NG04 563 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 ST7LQ8TDW4 575 aa13.35□□□□□ -0.27
VRK3-221ENST00000600284 ZNF418Q8TF45 676 aaPredicted RBP13.35□□□□□ -0.27
VRK3-221ENST00000600284 FOXH1O75593 365 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 GPANK1O95872 356 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 AVPP01185 164 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 DBHP09172 617 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 CPT2P23786 658 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 ECH1Q13011 328 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 MEP1BQ16820 701 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 KRTAP27-1Q3LI81 207 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 OTPQ5XKR4 325 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 ZNF620Q6ZNG0 422 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 COLCA1Q6ZS62 124 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 LRRC28Q86X40 367 aaPredicted RBP13.34□□□□□ -0.27
VRK3-221ENST00000600284 KLHL36Q8N4N3 616 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 OR8G5Q8NG78 346 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 OR13G1Q8NGZ3 307 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 OR4K13Q8NH42 304 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 NANPQ8TBE9 248 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 ZNF582Q96NG8 517 aaPredicted RBP13.34□□□□□ -0.27
VRK3-221ENST00000600284 CDADC1Q9BWV3 514 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 C1QTNF5Q9BXJ0 243 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 TRIM15Q9C019 465 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 RPRD1BQ9NQG5 326 aaKnown RBP13.34□□□□□ -0.27
VRK3-221ENST00000600284 ACTR3BQ9P1U1 418 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 KCNG2Q9UJ96 466 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 PCDHB10Q9UN67 800 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 PPP1R3CQ9UQK1 317 aa13.34□□□□□ -0.27
VRK3-221ENST00000600284 POLR3KQ9Y2Y1 108 aaPredicted RBP13.34□□□□□ -0.27
VRK3-221ENST00000600284 TANC2Q9HCD6 1990 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 ANK2Q01484 3957 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 VENTXO95231 258 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 SBK2P0C263 348 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 SELEP16581 610 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 MXRA7P84157 204 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 RSPO1Q2MKA7 263 aaPredicted RBP13.33□□□□□ -0.28
VRK3-221ENST00000600284 SLC18B1Q6NT16 456 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 PGBD2Q6P3X8 592 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 ARHGAP24Q8N264 748 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 ATG16L2Q8NAA4 619 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 SEMA6DQ8NFY4 1073 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 OR2AJ1Q8NGZ0 328 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 ITLN1Q8WWA0 313 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 POP5Q969H6 163 aaKnown RBP13.33□□□□□ -0.28
VRK3-221ENST00000600284 OR2V2Q96R30 315 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 PATZ1Q9HBE1 687 aaKnown RBP13.33□□□□□ -0.28
VRK3-221ENST00000600284 UBAP1Q9NZ09 502 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 PTTG3PQ9NZH4 202 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 CYB5R1Q9UHQ9 305 aa13.33□□□□□ -0.28
VRK3-221ENST00000600284 LOC105371242A0A075B767 164 aa13.32□□□□□ -0.28
VRK3-221ENST00000600284 A0A1B0GWJ7 208 aa13.32□□□□□ -0.28
VRK3-221ENST00000600284 OR6C68A6NDL8 312 aa13.32□□□□□ -0.28
VRK3-221ENST00000600284 IQCF6A8MYZ5 107 aa13.32□□□□□ -0.28
VRK3-221ENST00000600284 EPHA1P21709 976 aa13.32□□□□□ -0.28
VRK3-221ENST00000600284 MAGEA2P43356 314 aa13.32□□□□□ -0.28
VRK3-221ENST00000600284 SRP9P49458 86 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms