RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 R4GMQ9 66 aa13.51□□□□□ -0.25
UPF1-206ENST00000598471 ARPC4-TTLL3A0A0A6YYG9 625 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 TRBV2A0A0J9YWF9 115 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 PNMA8CA0A1B0GUJ8 204 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 IQCMA0A1B0GVH7 501 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 OR6C6A6NF89 314 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 A6NHS1 94 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 A8MXE2 369 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 E9PI62 339 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 LOC110117498-PIK3R3F6TDL0 507 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 OGG1O15527 345 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 PLPP2O43688 288 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 GPRIN2O60269 458 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 HLA-HP01893 362 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 CD1AP06126 327 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 COX5BP10606 129 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 PSMB1P20618 241 aaKnown RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 PSMA1P25786 263 aaKnown RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 CHRNB4P30926 498 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 GABRA5P31644 462 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 TGFBR2P37173 567 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 HTR5AP47898 357 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 GTF2A1P52655 376 aaPredicted RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 PSMA6P60900 246 aaKnown RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 RAB1AP62820 205 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 ALKBH1Q13686 389 aaKnown RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 DOC2BQ14184 412 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 TRAM1Q15629 374 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 GSG1Q2KHT4 349 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 PABPC1L2AQ5JQF8 200 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 C1QTNF12Q5T7M4 302 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 DMKNQ6E0U4 476 aaPredicted RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 ZNF774Q6NX45 483 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 FDX2Q6P4F2 183 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 ZNF474Q6S9Z5 364 aaPredicted RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 PHC2Q8IXK0 858 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 ZNF283Q8N7M2 679 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 ZFP41Q8N8Y5 198 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 STEAP2Q8NFT2 490 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 ZNF420Q8TAQ5 688 aaPredicted RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 SMIM19Q96E16 107 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 USB1Q9BQ65 265 aaKnown RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 FUNDC2Q9BWH2 189 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 COMMD4Q9H0A8 199 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 WNT5BQ9H1J7 359 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 MOV10Q9HCE1 1003 aaKnown RBP13.5□□□□□ -0.25
UPF1-206ENST00000598471 SLC17A5Q9NRA2 495 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 ST6GALNAC2Q9UJ37 374 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 GTF2A1LQ9UNN4 478 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 AMDHD2Q9Y303 409 aa13.5□□□□□ -0.25
UPF1-206ENST00000598471 TMEM269A0A1B0GVZ9 245 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 SYNGR3O43761 229 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 PATE4P0C8F1 98 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 PLA2G2AP14555 144 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 PAX7P23759 505 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 CX3CR1P49238 355 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 GDI2P50395 445 aaKnown RBP13.49□□□□□ -0.25
UPF1-206ENST00000598471 MMP16P51512 607 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 CCR9P51686 369 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 PRKXP51817 358 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 TPTEP56180 551 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 SLC3A1Q07837 685 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 SSX1Q16384 188 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 SLC25A35Q3KQZ1 300 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 BCL2L15Q5TBC7 163 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 FJX1Q86VR8 437 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 ANKRD13BQ86YJ7 626 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 RELL2Q8NC24 303 aaPredicted RBP13.49□□□□□ -0.25
UPF1-206ENST00000598471 OR2G2Q8NGZ5 317 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 AKR7LQ8NHP1 331 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 FGFBP3Q8TAT2 258 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 RAB2BQ8WUD1 216 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 LRRC46Q96FV0 321 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 C4orf45Q96LM5 186 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 BCL7BQ9BQE9 202 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 SP140LQ9H930 580 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 ZNF224Q9NZL3 707 aa13.49□□□□□ -0.25
UPF1-206ENST00000598471 FREM1Q5H8C1 2179 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 RP1L1Q8IWN7 2480 aaPredicted RBP13.48□□□□□ -0.25
UPF1-206ENST00000598471 ACOD1A6NK06 481 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 OR5H1A6NKK0 313 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 TMEM212A6NML5 194 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 M0R135 149 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 SERPINA3P01011 423 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 ASCL1P50553 236 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 TMBIM6P55061 237 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 TUBA1BP68363 451 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 GALK2Q01415 458 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 DRAM2Q6UX65 266 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 STAC2Q6ZMT1 411 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 TUBA1AQ71U36 451 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 CATSPERDQ86XM0 798 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 MS4A15Q8N5U1 240 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 ZNF676Q8N7Q3 588 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 OR5AK2Q8NH90 309 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 PRR7Q8TB68 274 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 RPS4Y2Q8TD47 263 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 ZNF799Q96GE5 643 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 DOK1Q99704 481 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 TMED9Q9BVK6 235 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms