RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 RPL22L1Q6P5R6 122 aaKnown RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 ARL9Q6T311 187 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 PHC2Q8IXK0 858 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 OR1F12Q8NHA8 337 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 HSD17B8Q92506 261 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 RNF166Q96A37 237 aaPredicted RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 COQ7Q99807 217 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 NOX3Q9HBY0 568 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 SLC17A5Q9NRA2 495 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 NDUFB11Q9NX14 153 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 COQ3Q9NZJ6 369 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 JKAMPQ9P055 326 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 SIRT4Q9Y6E7 314 aaPredicted RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 R4GMQ9 66 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 ARPC4-TTLL3A0A0A6YYG9 625 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 SMIM31A0A1B0GVY4 71 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 OR6C6A6NF89 314 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 PSMB1P20618 241 aaKnown RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 CHRNB4P30926 498 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 UQCRFS1P47985 274 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 PSMA6P60900 246 aaKnown RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 RAB1AP62820 205 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 ADORA2A-AS1P86434 159 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 ECH1Q13011 328 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 GSG1Q2KHT4 349 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 GPR107Q5VW38 600 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 DMKNQ6E0U4 476 aaPredicted RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 ZNF544Q6NX49 715 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 STAC2Q6ZMT1 411 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 CLVS1Q8IUQ0 354 aaPredicted RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 ALDH16A1Q8IZ83 802 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 OR2G2Q8NGZ5 317 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 PRR7Q8TB68 274 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 RPS4Y2Q8TD47 263 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 SPTSSAQ969W0 71 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 SMIM19Q96E16 107 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 CCDC120Q96HB5 630 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 KCNJ15Q99712 375 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 FUNDC2Q9BWH2 189 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 ATPIF1Q9UII2 106 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 SMG1Q96Q15 3661 aaKnown RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 CFAP46Q8IYW2 2715 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 TRBV2A0A0J9YWF9 115 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 A6NHS1 94 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 LOC110117498-PIK3R3F6TDL0 507 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 OGG1O15527 345 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 LRRTM2O43300 516 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 PLPP2O43688 288 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 SRSF10O75494 262 aaKnown RBP12.78□□□□□ -0.36
VRK3-212ENST00000596814 GDI2P50395 445 aaKnown RBP12.78□□□□□ -0.36
VRK3-212ENST00000596814 PRKXP51817 358 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 NANOS3P60323 173 aaKnown RBP12.78□□□□□ -0.36
VRK3-212ENST00000596814 SLC3A1Q07837 685 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 MFGE8Q08431 387 aaPredicted RBP12.78□□□□□ -0.36
VRK3-212ENST00000596814 GPR50Q13585 617 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 ALKBH1Q13686 389 aaKnown RBP12.78□□□□□ -0.36
VRK3-212ENST00000596814 FDX2Q6P4F2 183 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 MDP1Q86V88 176 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 P2RY8Q86VZ1 359 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 ZNF843Q8N446 348 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 ZNF283Q8N7M2 679 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 C4orf45Q96LM5 186 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 HDHD5Q9BXW7 423 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 OBP2BQ9NPH6 170 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 B3GNT2Q9NY97 397 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 ELOVL5Q9NYP7 299 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 NDUFA13Q9P0J0 144 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 GTF2A1LQ9UNN4 478 aa12.78□□□□□ -0.36
VRK3-212ENST00000596814 TMEM269A0A1B0GVZ9 245 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 A0A1W2PR80 420 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 OR5H1A6NKK0 313 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 M0R135 149 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 PNPP00491 289 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 CRYGSP22914 178 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 GABRA5P31644 462 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 OTX1P32242 354 aaPredicted RBP12.77□□□□□ -0.36
VRK3-212ENST00000596814 CX3CR1P49238 355 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 GALK2Q01415 458 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 PLP2Q04941 152 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 SLC25A35Q3KQZ1 300 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 SOWAHCQ53LP3 525 aaPredicted RBP12.77□□□□□ -0.36
VRK3-212ENST00000596814 MTFR2Q6P444 385 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 ASB5Q8WWX0 329 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 SLC7A6Q92536 515 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 ZNF799Q96GE5 643 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 PGLYRP3Q96LB9 341 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 DOK1Q99704 481 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 RBM38Q9H0Z9 239 aaKnown RBP12.77□□□□□ -0.36
VRK3-212ENST00000596814 MOB1AQ9H8S9 216 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 FRRS1LQ9P0K9 344 aa12.77□□□□□ -0.36
VRK3-212ENST00000596814 KMT2BQ9UMN6 2715 aaPredicted RBP12.77□□□□□ -0.37
VRK3-212ENST00000596814 IQCMA0A1B0GVH7 501 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 CCDC160A6NGH7 325 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 F5H5K5 113 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 H3BSA7 217 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 APOC1P02654 83 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 DBHP09172 617 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 COX5BP10606 129 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 GADD45AP24522 165 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 ASCL1P50553 236 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms