RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 NSMCE2Q96MF7 247 aa8.85□□□□□ -0.99
LIG1-213ENST00000596672 NMNAT3Q96T66 252 aa8.85□□□□□ -0.99
LIG1-213ENST00000596672 RERGLQ9H628 205 aa8.85□□□□□ -0.99
LIG1-213ENST00000596672 PNRC2Q9NPJ4 139 aaKnown RBP8.85□□□□□ -0.99
LIG1-213ENST00000596672 MAGEL2Q9UJ55 1249 aa8.85□□□□□ -0.99
LIG1-213ENST00000596672 PURGQ9UJV8 347 aaKnown RBP8.85□□□□□ -0.99
LIG1-213ENST00000596672 B9D1Q9UPM9 204 aa8.85□□□□□ -0.99
LIG1-213ENST00000596672 GRIP1Q9Y3R0 1128 aa8.85□□□□□ -0.99
LIG1-213ENST00000596672 TCRBV5S2A0A599 114 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 OR6C68A6NDL8 312 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 C12orf71A8MTZ7 269 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 H0YL77 283 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 DOK2O60496 412 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 KHDRBS3O75525 346 aaKnown RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 FSHBP01225 129 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 HIST1H1CP16403 213 aaKnown RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 SELEP16581 610 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 ADRA2CP18825 462 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 KITLGP21583 273 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 GGT2P36268 569 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 PMELP40967 661 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 TUSC1Q2TAM9 212 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 RFX4Q33E94 735 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 ZNF770Q6IQ21 691 aaPredicted RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 C1orf94Q6P1W5 598 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 ZFP1Q6P2D0 407 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 PGBD2Q6P3X8 592 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 SMARCD3Q6STE5 483 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 DPY19L2P2Q6ZN68 376 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 CFAP77Q6ZQR2 320 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 LINC00346Q8IVM7 164 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 NPEPL1Q8NDH3 523 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 SLC26A10Q8NG04 563 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 OR4C15Q8NGM1 316 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 OR4K13Q8NH42 304 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 OR1F12Q8NHA8 337 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 FNDC8Q8TC99 324 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 HAVCR1Q96D42 359 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 SAMD8Q96LT4 415 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 PLA2G12AQ9BZM1 189 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 KCNN2Q9H2S1 579 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 OR52D1Q9H346 318 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 METTL17Q9H7H0 456 aaPredicted RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 WDR76Q9H967 626 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 SAP30LQ9HAJ7 183 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 SRA1Q9HD15 236 aaKnown RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 MMP26Q9NRE1 261 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 TBCCD1Q9NVR7 557 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 MRPL22Q9NWU5 206 aaKnown RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 EIF3KQ9UBQ5 218 aaKnown RBP8.84□□□□□ -0.99
LIG1-213ENST00000596672 RPS6KA6Q9UK32 745 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 AURKCQ9UQB9 309 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 TMEM5Q9Y2B1 443 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 AP4S1Q9Y587 144 aa8.84□□□□□ -0.99
LIG1-213ENST00000596672 IGHV3-64DA0A0J9YX35 117 aa8.83□□□□□ -1
LIG1-213ENST00000596672 DHRS12A0PJE2 317 aa8.83□□□□□ -1
LIG1-213ENST00000596672 TRAPPC2LH3BP13 241 aa8.83□□□□□ -1
LIG1-213ENST00000596672 ARPC3O15145 178 aa8.83□□□□□ -1
LIG1-213ENST00000596672 MLNRO43193 412 aa8.83□□□□□ -1
LIG1-213ENST00000596672 AHCYL1O43865 530 aa8.83□□□□□ -1
LIG1-213ENST00000596672 ABHD16AO95870 558 aa8.83□□□□□ -1
LIG1-213ENST00000596672 IGHV2-70P01814 119 aa8.83□□□□□ -1
LIG1-213ENST00000596672 GCH1P30793 250 aa8.83□□□□□ -1
LIG1-213ENST00000596672 IFNA8P32881 189 aa8.83□□□□□ -1
LIG1-213ENST00000596672 RPS27P42677 84 aaKnown RBP8.83□□□□□ -1
LIG1-213ENST00000596672 SELENOVP59797 346 aa8.83□□□□□ -1
LIG1-213ENST00000596672 PCBD1P61457 104 aa8.83□□□□□ -1
LIG1-213ENST00000596672 LSM6P62312 80 aaKnown RBP8.83□□□□□ -1
LIG1-213ENST00000596672 MTX3Q5HYI7 312 aa8.83□□□□□ -1
LIG1-213ENST00000596672 FAM209AQ5JX71 171 aa8.83□□□□□ -1
LIG1-213ENST00000596672 GPR139Q6DWJ6 353 aa8.83□□□□□ -1
LIG1-213ENST00000596672 OR2T2Q6IF00 324 aa8.83□□□□□ -1
LIG1-213ENST00000596672 SLC18B1Q6NT16 456 aa8.83□□□□□ -1
LIG1-213ENST00000596672 COLCA1Q6ZS62 124 aa8.83□□□□□ -1
LIG1-213ENST00000596672 GLCCI1Q86VQ1 547 aa8.83□□□□□ -1
LIG1-213ENST00000596672 CYP4Z1Q86W10 505 aa8.83□□□□□ -1
LIG1-213ENST00000596672 GLB1L2Q8IW92 636 aa8.83□□□□□ -1
LIG1-213ENST00000596672 ALDH16A1Q8IZ83 802 aa8.83□□□□□ -1
LIG1-213ENST00000596672 ADGRG5Q8IZF4 528 aa8.83□□□□□ -1
LIG1-213ENST00000596672 OR5AS1Q8N127 324 aa8.83□□□□□ -1
LIG1-213ENST00000596672 OR9Q2Q8NGE9 314 aa8.83□□□□□ -1
LIG1-213ENST00000596672 SNX33Q8WV41 574 aa8.83□□□□□ -1
LIG1-213ENST00000596672 ITLN1Q8WWA0 313 aa8.83□□□□□ -1
LIG1-213ENST00000596672 NRG4Q8WWG1 115 aa8.83□□□□□ -1
LIG1-213ENST00000596672 LRTOMTQ8WZ04 291 aa8.83□□□□□ -1
LIG1-213ENST00000596672 DUS3LQ96G46 650 aaKnown RBP8.83□□□□□ -1
LIG1-213ENST00000596672 MAP6Q96JE9 813 aa8.83□□□□□ -1
LIG1-213ENST00000596672 ERMAPQ96PL5 475 aaPredicted RBP8.83□□□□□ -1
LIG1-213ENST00000596672 PKP2Q99959 881 aa8.83□□□□□ -1
LIG1-213ENST00000596672 EGLN3Q9H6Z9 239 aa8.83□□□□□ -1
LIG1-213ENST00000596672 IL1RAPQ9NPH3 570 aa8.83□□□□□ -1
LIG1-213ENST00000596672 ESM1Q9NQ30 184 aa8.83□□□□□ -1
LIG1-213ENST00000596672 DECR2Q9NUI1 292 aa8.83□□□□□ -1
LIG1-213ENST00000596672 PLEK2Q9NYT0 353 aa8.83□□□□□ -1
LIG1-213ENST00000596672 PTTG3PQ9NZH4 202 aa8.83□□□□□ -1
LIG1-213ENST00000596672 SAMD4AQ9UPU9 718 aaKnown RBP8.83□□□□□ -1
LIG1-213ENST00000596672 SOX21Q9Y651 276 aaPredicted RBP8.83□□□□□ -1
LIG1-213ENST00000596672 CLDN25C9JDP6 229 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms