RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 CR1P17927 2039 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 GCH1P30793 250 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 PPP2R2BQ00005 443 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 NKPD1Q17RQ9 610 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 SPATA46Q5T0L3 261 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 LINC01590Q5TEZ4 76 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 TMEM236Q5W0B7 351 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 PLBD1Q6P4A8 553 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 LYPD4Q6UWN0 246 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 ZNF511Q8NB15 262 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 SLC25A40Q8TBP6 338 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 KLF14Q8TD94 323 aaPredicted RBP10.2□□□□□ -0.78
LIG3-213ENST00000590630 SNX33Q8WV41 574 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 NEU4Q8WWR8 484 aaPredicted RBP10.2□□□□□ -0.78
LIG3-213ENST00000590630 SLC7A6Q92536 515 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 MAP6Q96JE9 813 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 COX4I2Q96KJ9 171 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 NSD1Q96L73 2696 aaPredicted RBP10.2□□□□□ -0.78
LIG3-213ENST00000590630 CIB1Q99828 191 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 PKP2Q99959 881 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 RBM4BQ9BQ04 359 aaKnown RBP10.2□□□□□ -0.78
LIG3-213ENST00000590630 OR2J1Q9GZK6 312 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 MED20Q9H944 212 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 WDR76Q9H967 626 aa10.2□□□□□ -0.78
LIG3-213ENST00000590630 PNRC2Q9NPJ4 139 aaKnown RBP10.2□□□□□ -0.78
LIG3-213ENST00000590630 MYEF2Q9P2K5 600 aaKnown RBP10.2□□□□□ -0.78
LIG3-213ENST00000590630 TMEFF2Q9UIK5 374 aaPredicted RBP10.2□□□□□ -0.78
LIG3-213ENST00000590630 SETD2Q9BYW2 2564 aaPredicted RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 SAC3D1A6NKF1 404 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 ZAR1LA6NP61 321 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 H7C1Q1 480 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 ZNF593O00488 134 aaPredicted RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 MITFO75030 526 aaPredicted RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 CLPTM1O96005 669 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 DBHP09172 617 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 SPARCP09486 303 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 GSTT1P30711 240 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 RPS27P42677 84 aaKnown RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 ALDH3B1P43353 468 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 TNK1Q13470 666 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 SNAPC1Q16533 368 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 KRTAP27-1Q3LI81 207 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 SLC35D3Q5M8T2 416 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 TMEM154Q6P9G4 183 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 DCXRQ7Z4W1 244 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 CPOQ8IVL8 374 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 ZCCHC24Q8N2G6 241 aaKnown RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 ZNF525Q8N782 197 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 OR5L1Q8NGL2 311 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 FAM168AQ92567 244 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 APOBEC3DQ96AK3 386 aaPredicted RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 INTS14Q96SY0 518 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 RHNO1Q9BSD3 238 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 GABARAPL3Q9BY60 117 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 OR51V1Q9H2C8 321 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 MARCH7Q9H992 704 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 S100A14Q9HCY8 104 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 HINT3Q9NQE9 182 aaKnown RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 DDX28Q9NUL7 540 aaKnown RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 TVP23BQ9NYZ1 205 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 TAAR3PQ9P1P4 343 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 CGGBP1Q9UFW8 167 aaPredicted RBP10.19□□□□□ -0.78
LIG3-213ENST00000590630 CSPG4Q6UVK1 2322 aa10.19□□□□□ -0.78
LIG3-213ENST00000590630 PLSCR5A0PG75 271 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 NDUFS8O00217 210 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 LY6HO94772 140 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 ALPLP05186 524 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 INHBBP09529 407 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 SLC2A5P22732 501 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 EPHA2P29317 976 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 LIPAP38571 399 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 MPV17P39210 176 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 MAD2L1BPQ15013 274 aaPredicted RBP10.18□□□□□ -0.78
LIG3-213ENST00000590630 RSPO1Q2MKA7 263 aaPredicted RBP10.18□□□□□ -0.78
LIG3-213ENST00000590630 PCGF3Q3KNV8 242 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 KLHL12Q53G59 568 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 SLX4IPQ5VYV7 408 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 COLCA1Q6ZS62 124 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 CXXC5Q7LFL8 322 aaKnown RBP10.18□□□□□ -0.78
LIG3-213ENST00000590630 SHFQ7M4L6 423 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 ERI1Q8IV48 349 aaKnown RBP10.18□□□□□ -0.78
LIG3-213ENST00000590630 OR10S1Q8NGN2 331 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 OR6N2Q8NGY6 317 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 ST7LQ8TDW4 575 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 STMN2Q93045 179 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 SPTSSAQ969W0 71 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 TPK1Q9H3S4 243 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 CYSLTR2Q9NS75 346 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 STARD10Q9Y365 291 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 ORC6Q9Y5N6 252 aa10.18□□□□□ -0.78
LIG3-213ENST00000590630 YLPM1P49750 1951 aaKnown RBP10.17□□□□□ -0.78
LIG3-213ENST00000590630 ABCA1O95477 2261 aa10.17□□□□□ -0.78
LIG3-213ENST00000590630 IGHV4-30-2A0A087WSY4 118 aa10.17□□□□□ -0.78
LIG3-213ENST00000590630 LOC390937A0A1W2PQ73 354 aa10.17□□□□□ -0.78
LIG3-213ENST00000590630 C17orf100A8MU93 164 aa10.17□□□□□ -0.78
LIG3-213ENST00000590630 ZNF878C9JN71 531 aa10.17□□□□□ -0.78
LIG3-213ENST00000590630 F5H5K5 113 aa10.17□□□□□ -0.78
LIG3-213ENST00000590630 EI24O14681 340 aa10.17□□□□□ -0.78
LIG3-213ENST00000590630 ACSM4P0C7M7 580 aa10.17□□□□□ -0.78
LIG3-213ENST00000590630 NAT2P11245 290 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms