RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ABHD4Q8TB40 342 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 FAM57AQ8TBR7 257 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SLC22A8Q8TCC7 542 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZNF480Q8WV37 535 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 CCDC107Q8WV48 283 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 FCAMRQ8WWV6 532 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 THRSPQ92748 146 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 RAB8BQ92930 207 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 GCDHQ92947 438 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 ARL11Q969Q4 196 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZNF501Q96CX3 271 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 HAVCR1Q96D42 359 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SLC25A38Q96DW6 304 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SLC41A3Q96GZ6 507 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SLC41A2Q96JW4 573 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 C4orf36Q96KX1 117 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZFP3Q96NJ6 502 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 FERD3LQ96RJ6 166 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 TSNAXQ99598 290 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 TIMP4Q99727 224 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 RSPO3Q9BXY4 272 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 FXYD6Q9H0Q3 95 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 OR10A4Q9H209 315 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 C1orf198Q9H425 327 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ESRP2Q9H6T0 727 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 ISG20L2Q9H9L3 353 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 NOX3Q9HBY0 568 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 MYOZ1Q9NP98 299 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 TMEM138Q9NPI0 162 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SLC35C2Q9NQQ7 365 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 CMC2Q9NRP2 79 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZFP57Q9NU63 452 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZCCHC3Q9NUD5 404 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 C14orf105Q9NVL8 296 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SOHLH2Q9NX45 425 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 CNIH4Q9P003 139 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 NTMQ9P121 344 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 UPB1Q9UBR1 384 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 B4GALT6Q9UBX8 382 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 TBC1D29Q9UFV1 150 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 MRTO4Q9UKD2 239 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 PRKAB1Q9Y478 270 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 RNF114Q9Y508 228 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SIRT4Q9Y6E7 314 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 SCN2AQ99250 2005 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 KRTAP4-8A0A0G2JLE6 195 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 A0A1B0GTH9 108 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 A0A1B0GTI1 187 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 PRAMEF27A3QJZ7 478 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 RNF222A6NCQ9 220 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 OR14I1A6ND48 311 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 UNC119BA6NIH7 251 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 IFITM5A6NNB3 132 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 RIIAD1A6NNX1 92 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 LGALS8O00214 317 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 WRBO00258 174 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 UBE2CO00762 179 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 NUPL2O15504 423 aaKnown RBP3.7□□□□□ -1.82
LIG3-211ENST00000588713 OGG1O15527 345 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 NDUFS4O43181 175 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 SSX5O60225 188 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 FMO6PO60774 539 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 RCBTB2O95199 551 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 SPDEFO95238 335 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 SIX6O95475 246 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 AGR2O95994 175 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 IFNGP01579 166 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 S100A9P06702 114 aaKnown RBP3.7□□□□□ -1.82
LIG3-211ENST00000588713 FABP1P07148 127 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 ELFN1P0C7U0 828 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 PRG2P13727 222 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 ZNF3P17036 446 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 SPI1P17947 270 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 ANXA7P20073 488 aaKnown RBP3.7□□□□□ -1.82
LIG3-211ENST00000588713 ACADLP28330 430 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 BSGP35613 385 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 GPR4P46093 362 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 P2RX1P51575 399 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 ATP5J2P56134 94 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 H2BFSP57053 126 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 RGS8P57771 180 aaPredicted RBP3.7□□□□□ -1.82
LIG3-211ENST00000588713 TAS2R20P59543 309 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 ACTBP60709 375 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 SSTP61278 116 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 ERVK-25P63136 954 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 HSD11B2P80365 405 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 PRR5P85299 388 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 ZNF85Q03923 595 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 SLC3A1Q07837 685 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 GUCA2BQ16661 112 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 PNLIPRP3Q17RR3 467 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 CLEC12BQ2HXU8 276 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 NDUFAF6Q330K2 333 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 CDNFQ49AH0 187 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 IGSF11Q5DX21 431 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 TMEM255AQ5JRV8 349 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 CLEC12AQ5QGZ9 265 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 VAX1Q5SQQ9 334 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 TMEM69Q5SWH9 247 aa3.7□□□□□ -1.82
LIG3-211ENST00000588713 KHDRBS2Q5VWX1 349 aaKnown RBP3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms