RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 AKR7A2O43488 359 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 CHST10O43529 356 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TLX2O43763 284 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TSC22D2O75157 780 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SCGB2A1O75556 95 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 PRKRAO75569 313 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC22A5O76082 557 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 C1orf105O95561 183 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 DHFRP00374 187 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 OPN1SWP03999 348 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 FHP07954 510 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 LIMS3P0CW19 117 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 LIMS4P0CW20 117 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SAGP10523 405 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC2A2P11168 524 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 POU2F1P14859 743 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 UGT2B7P16662 529 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 MMP11P24347 488 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 MPZP25189 248 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 HOXD10P28358 340 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 IMPA1P29218 277 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 AQP1P29972 269 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC6A1P30531 599 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 CHI3L1P36222 383 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SOX3P41225 446 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 BDKRB1P46663 353 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 IER3P46695 156 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC11A1P49279 550 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ARPP19P56211 112 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TRA2BP62995 288 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 FABP5Q01469 135 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 PNRC1Q12796 327 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 MRPL28Q13084 256 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SCGB2A2Q13296 93 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SGCGQ13326 291 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TSTA3Q13630 321 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 GINS1Q14691 196 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 CEBPEQ15744 281 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 GRK1Q15835 563 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TATDN3Q17R31 274 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 AADACL4Q5VUY2 407 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 PRAMEF7Q5VXH5 474 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 LIPKQ5VXJ0 399 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 MFSD14CQ5VZR4 134 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 C22orf42Q6IC83 251 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 PRR27Q6MZM9 219 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TEX261Q6UWH6 196 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 PAMR1Q6UXH9 720 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 RFLNAQ6ZTI6 216 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 RASSF6Q6ZTQ3 369 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 C6orf120Q7Z4R8 191 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TAF8Q7Z7C8 310 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TMEM150AQ86TG1 271 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TPRA1Q86W33 373 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 AMIGO1Q86WK6 493 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 HOGA1Q86XE5 327 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 GPR65Q8IYL9 337 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 C9orf62Q8N4C0 152 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TRAM1L1Q8N609 369 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 MAPKAPK5-AS1Q8N8E1 139 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ZNF557Q8N988 423 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 MORN4Q8NDC4 146 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 OR4K1Q8NGD4 311 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 OR5H6Q8NGV6 325 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 OR52N1Q8NH53 320 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 OR52P1PQ8NH57 321 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC7A13Q8TCU3 470 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 UFD1Q92890 307 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 RAB7BQ96AH8 199 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TM4SF18Q96CE8 201 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 B3GALT6Q96L58 329 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 OR2M2Q96R28 347 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 IL4I1Q96RQ9 567 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ZNF607Q96SK3 696 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ZNF559Q9BR84 538 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 C7orf50Q9BRJ6 194 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ATG101Q9BSB4 218 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 RHBGQ9H310 441 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ANKRD19PQ9H560 264 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 HEXA-AS1Q9H8Q6 139 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TRIM45Q9H8W5 580 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 CENPMQ9NSP4 180 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ZCCHC3Q9NUD5 404 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 MED17Q9NVC6 651 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 MED9Q9NWA0 146 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 IL20Q9NYY1 176 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 TVP23BQ9NYZ1 205 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 RHCGQ9UBD6 479 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 NUP50Q9UKX7 468 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 NDRG2Q9UN36 371 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ING4Q9UNL4 249 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 HS3ST2Q9Y278 367 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 PRG3Q9Y2Y8 225 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 FKBP7Q9Y680 259 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 U3KQ87 197 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 KIAA1671Q9BY89 1806 aa3.32□□□□□ -1.88
SMCHD1-208ENST00000583344 ANKRD12Q6UB98 2062 aa3.31□□□□□ -1.88
SMCHD1-208ENST00000583344 VWA8A3KMH1 1905 aa3.31□□□□□ -1.88
SMCHD1-208ENST00000583344 A0A1B0GVI7 797 aa3.31□□□□□ -1.88
SMCHD1-208ENST00000583344 A0A1W2PN81 502 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms