RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 HMMRO75330 724 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 CDRT1O95170 752 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 OR8U9P0C7N5 309 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 GGT1P19440 569 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 TNNT2P45379 298 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 PRRX1P54821 245 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 CDKN2DP55273 166 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 AVPI1Q5T686 147 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 CERS6Q6ZMG9 384 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 SLC16A13Q7RTY0 426 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 BBS5Q8N3I7 341 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 OR9A2Q8NGT5 310 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 NRGNQ92686 78 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 HSD17B10Q99714 261 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 SLC38A10Q9HBR0 1119 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 ENOPH1Q9UHY7 261 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 INSRP06213 1382 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 AHDC1Q5TGY3 1603 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 TRAV19A0A0A6YYK7 116 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 H0YJW9 148 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 CLOCKO15516 846 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 FKBP6O75344 327 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 REM1O75628 298 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 OR2F2O95006 317 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 CD74P04233 296 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 EIF4EP06730 217 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 ZNF688P0C7X2 276 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 STXBP1P61764 594 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 ZNF616Q08AN1 781 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 SELENBP1Q13228 472 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 ZNF726P1Q15940 193 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 TCEAL5Q5H9L2 206 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 OR10AD1Q8NGE0 317 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 OR6N1Q8NGY5 312 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 OR13G1Q8NGZ3 307 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 TCEAL3Q969E4 200 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 SLC25A46Q96AG3 418 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 EEF1AKMT3Q96AZ1 226 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 TBL1YQ9BQ87 522 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 LZTS2Q9BRK4 669 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 PHLPP2Q6ZVD8 1323 aa2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 COL27A1Q8IZC6 1860 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-204ENST00000581226 C5orf63A6NC05 138 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 LYRM9A8MSI8 78 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 DNASE2O00115 360 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 CACNG3O60359 315 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 OR2J3O76001 311 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 H6PDO95479 791 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 TROVE2P10155 538 aaKnown RBP eCLIP2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 ERGP11308 486 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 IL1RNP18510 177 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 SLC1A1P43005 524 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 PPP1CBP62140 327 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 MPV17L2Q567V2 206 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 SOHLH1Q5JUK2 328 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 C9orf135Q5VTT2 229 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 GPR107Q5VW38 600 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 RAET1LQ5VY80 246 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 CARD17Q5XLA6 110 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 UNQ9165/PRO28630Q6UXU0 137 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 MBOAT1Q6ZNC8 495 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 CALHM3Q86XJ0 350 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 TMEM256Q8N2U0 113 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 LRRC52Q8N7C0 313 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 COX18Q8N8Q8 333 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 TMEM230Q96A57 120 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 TGS1Q96RS0 853 aaKnown RBP2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 FGF23Q9GZV9 251 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 C1orf198Q9H425 327 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 TMEM185BQ9H7F4 350 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 SIGLEC9Q9Y336 463 aa2.3□□□□□ -2.04
SMCHD1-204ENST00000581226 NUP214P35658 2090 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 NINLQ9Y2I6 1382 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 SERTM2A0A1B0GWG4 89 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 SMCO3A2RU48 225 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 ZNF233A6NK53 670 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 CHST10O43529 356 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 CDC40O60508 579 aaKnown RBP eCLIP2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 HLA-DQB1P01920 261 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 CTSLP07711 333 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 SFTPCP11686 197 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 TAS2R31P59538 309 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 CRADDP78560 199 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 ILKQ13418 452 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 UBE2UQ5VVX9 321 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 SCD5Q86SK9 330 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 OFCC1Q8IZS5 231 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 IQCKQ8N0W5 287 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 CHST4Q8NCG5 386 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 C17orf50Q8WW18 174 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 COL21A1Q96P44 957 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 PLIN2Q99541 437 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 CHP1Q99653 195 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 GEMIN7Q9H840 131 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 NEK6Q9HC98 313 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 RAB20Q9NX57 234 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 PITPNC1Q9UKF7 332 aa2.29□□□□□ -2.04
SMCHD1-204ENST00000581226 PALLDQ8WX93 1383 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 TRAV6A0A075B6T7 132 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms