RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CST2P09228 141 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 OCM2P0CE71 109 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 FCGR2AP12318 317 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 RAB3BP20337 219 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 ACHEP22303 614 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 MAPK3P27361 379 aaPredicted RBP9.24□□□□□ -0.93
SS18-217ENST00000580958 AGTR1P30556 359 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 DCTDP32321 178 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 MMP16P51512 607 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 PSMA6P60900 246 aaKnown RBP9.24□□□□□ -0.93
SS18-217ENST00000580958 GRB2P62993 217 aaKnown RBP9.24□□□□□ -0.93
SS18-217ENST00000580958 SLC25A35Q3KQZ1 300 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 IDNKQ5T6J7 187 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 RPUSD3Q6P087 351 aaKnown RBP9.24□□□□□ -0.93
SS18-217ENST00000580958 ZNF813Q6ZN06 617 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 LAX1Q8IWV1 398 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 ZNF100Q8IYN0 542 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 ZNF283Q8N7M2 679 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 OR51A4Q8NGJ6 313 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 OR5M9Q8NGP3 310 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 AP3S1Q92572 193 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 APH1AQ96BI3 265 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 ABHD17AQ96GS6 310 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 TRIB1Q96RU8 372 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 FOXB1Q99853 325 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 PBOV1Q9GZY1 135 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 MIXL1Q9H2W2 232 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 NIPAL2Q9H841 368 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 TP53TG5Q9Y2B4 290 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 RAXQ9Y2V3 346 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 AK6Q9Y3D8 172 aaKnown RBP9.24□□□□□ -0.93
SS18-217ENST00000580958 CMAHPQ9Y471 501 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 N6AMT1Q9Y5N5 214 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 PIEZO1Q92508 2521 aa9.24□□□□□ -0.93
SS18-217ENST00000580958 PRRC2CQ9Y520 2896 aaKnown RBP9.23□□□□□ -0.93
SS18-217ENST00000580958 LOC107986453A0A1B0GWG9 222 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ANKRD61A6NGH8 418 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 OR6C65A6NJZ3 312 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ZNF587BE7ETH6 402 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 RGS5O15539 181 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 AVPP01185 164 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 PATE4P0C8F1 98 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ZNF32P17041 273 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 TNFSF8P32971 234 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 CX3CR1P49238 355 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 TMPRSS3P57727 454 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ZNF121P58317 390 aaPredicted RBP9.23□□□□□ -0.93
SS18-217ENST00000580958 ARF1P84077 181 aaKnown RBP9.23□□□□□ -0.93
SS18-217ENST00000580958 RAB35Q15286 201 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 STK11Q15831 433 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 CEP78Q5JTW2 689 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ELFN2Q5R3F8 820 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 C9orf135Q5VTT2 229 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 TMEM244Q5VVB8 128 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 SFXN4Q6P4A7 337 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ZNF704Q6ZNC4 412 aaPredicted RBP9.23□□□□□ -0.93
SS18-217ENST00000580958 RHOUQ7L0Q8 258 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 BTLAQ7Z6A9 289 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ADGRE4PQ86SQ3 457 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 CCDC190Q86UF4 302 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 SKA3Q8IX90 412 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ELMOD2Q8IZ81 293 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 SLC22A24Q8N4F4 322 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 GFI1Q99684 422 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 KCNJ15Q99712 375 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 C12orf49Q9H741 205 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 ABCB9Q9NP78 766 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 DDX28Q9NUL7 540 aaKnown RBP9.23□□□□□ -0.93
SS18-217ENST00000580958 COMMD3Q9UBI1 195 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 UPB1Q9UBR1 384 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 PRSS50Q9UI38 385 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 DHDHQ9UQ10 334 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 SLC5A6Q9Y289 635 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 B3GNT3Q9Y2A9 372 aa9.23□□□□□ -0.93
SS18-217ENST00000580958 LOC400499M0QZD8 3231 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 FRYQ5TBA9 3013 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 NOTOA8MTQ0 251 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 RPL36A-HNRNPH2H7BZ11 118 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 PDCD5O14737 125 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 SGCEO43556 437 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 LMX1BO60663 402 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 HPGDSO60760 199 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 SS18L1O75177 396 aaPredicted RBP9.22□□□□□ -0.93
SS18-217ENST00000580958 CRYABP02511 175 aaKnown RBP9.22□□□□□ -0.93
SS18-217ENST00000580958 TTRP02766 147 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 ANXA2P07355 339 aaKnown RBP9.22□□□□□ -0.93
SS18-217ENST00000580958 ACSM4P0C7M7 580 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 UBCP0CG48 685 aaKnown RBP9.22□□□□□ -0.93
SS18-217ENST00000580958 SLC2A1P11166 492 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 SLC2A2P11168 524 aaPredicted RBP9.22□□□□□ -0.93
SS18-217ENST00000580958 SRMP19623 302 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 ANOS1P23352 680 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 CFL1P23528 166 aaKnown RBP9.22□□□□□ -0.93
SS18-217ENST00000580958 THBS2P35442 1172 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 ETV6P41212 452 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 FOXG1P55316 489 aaPredicted RBP9.22□□□□□ -0.93
SS18-217ENST00000580958 GALK2Q01415 458 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 SCRN3Q0VDG4 424 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 DDI2Q5TDH0 399 aa9.22□□□□□ -0.93
SS18-217ENST00000580958 ZNF774Q6NX45 483 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms