RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PCDHB10Q9UN67 800 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 A4GNTQ9UNA3 340 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 HIF3AQ9Y2N7 669 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 CAB39Q9Y376 341 aaPredicted RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 GRIP1Q9Y3R0 1128 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 PNMA8CA0A1B0GUJ8 204 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 IQCMA0A1B0GVH7 501 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 A0A1W2PRG6 482 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 ANKRD34BA5PLL1 514 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 FAM25EA8MYX2 175 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 FFAR1O14842 300 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 ANGPT2O15123 496 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 MAGEB3O15480 346 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 SPRY3O43610 288 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 PTHP01270 115 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 IGHMP01871 453 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 HIST1H2ABP04908 130 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 UMPSP11172 480 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 LAP3P28838 519 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 CD40LGP29965 261 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 RRM2P31350 389 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 IFNA8P32881 189 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 APLNRP35414 380 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 ZNF81P51508 661 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 ZNF84P51523 738 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 ERVK-25P63136 954 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 KCNJ8Q15842 424 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 ZNF181Q2M3W8 571 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 FAM209AQ5JX71 171 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 INTS11Q5TA45 600 aaKnown RBP5.68□□□□□ -1.5
VPS53-213ENST00000572334 IDO2Q6ZQW0 420 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 Q6ZR03 302 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 HIST3H2AQ7L7L0 130 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 TSEN54Q7Z6J9 526 aaKnown RBP5.68□□□□□ -1.5
VPS53-213ENST00000572334 CCDC28AQ8IWP9 274 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 SPARTQ8N0X7 666 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 DEFB108BQ8NET1 73 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 OR1J2Q8NGS2 313 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 GEMIN6Q8WXD5 167 aaKnown RBP5.68□□□□□ -1.5
VPS53-213ENST00000572334 NSMAFQ92636 917 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 HIST1H2ACQ93077 130 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 LRRC58Q96CX6 371 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 ASB9Q96DX5 294 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 C1orf147Q96MC9 270 aaPredicted RBP5.68□□□□□ -1.5
VPS53-213ENST00000572334 SLC6A7Q99884 636 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 OR2H1Q9GZK4 316 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 POLR2J2Q9GZM3 115 aaKnown RBP5.68□□□□□ -1.5
VPS53-213ENST00000572334 POLR2J3Q9H1A7 115 aaKnown RBP5.68□□□□□ -1.5
VPS53-213ENST00000572334 SAP30LQ9HAJ7 183 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 SMURF2Q9HAU4 748 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 RABL2AQ9UBK7 228 aaPredicted RBP5.68□□□□□ -1.5
VPS53-213ENST00000572334 SNX13Q9Y5W8 968 aa5.68□□□□□ -1.5
VPS53-213ENST00000572334 TGP01266 2768 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 A0A0G2JMP0 313 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 A0A0X1KG70 313 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 C5orf49A4QMS7 147 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 SNTNA6NMZ2 147 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 MCIDASD6RGH6 385 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 TRAPPC2LH3BP13 241 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 J3KTA2 159 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 J3QLI3 93 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 IMPA2O14732 288 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 PRSS23O95084 383 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 PTTG1O95997 202 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 IGHV2-70P01814 119 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 CD55P08174 381 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 CST2P09228 141 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 THRBP10828 461 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 COX4I1P13073 169 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 JUNBP17275 347 aaPredicted RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 CCNOP22674 350 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 PRKACBP22694 351 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 MYF6P23409 242 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ERFP50548 548 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 DAP3P51398 398 aaKnown RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 TAS2R41P59536 307 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 SELENOVP59797 346 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 RPL27P61353 136 aaKnown RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 SEC61A1P61619 476 aaKnown RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 PPP1CBP62140 327 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 TAGLNQ01995 201 aaKnown RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 TEKQ02763 1124 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 HSF2Q03933 536 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 PLP2Q04941 152 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 PSG7Q13046 419 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 CDK5R2Q13319 367 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 SGCAQ16586 387 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ZNF718Q3SXZ3 478 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 CYBRD1Q53TN4 286 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 AWAT1Q58HT5 328 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ALG10Q5BKT4 473 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 KLF17Q5JT82 389 aaPredicted RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 RBM48Q5RL73 367 aaKnown RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 C6orf183Q5T699 404 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ZNF774Q6NX45 483 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ZBTB49Q6ZSB9 765 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 AMIGO2Q86SJ2 522 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 SLC51BQ86UW2 128 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 IGFN1Q86VF2 1251 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 OR4M2Q8NGB6 313 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms