RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 LGALS13Q9UHV8 139 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 EMCNQ9ULC0 261 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 DIMT1Q9UNQ2 313 aaKnown RBP5.3□□□□□ -1.56
VPS53-212ENST00000572259 CFL2Q9Y281 166 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 YARS2Q9Y2Z4 477 aaKnown RBP5.3□□□□□ -1.56
VPS53-212ENST00000572259 NSG2Q9Y328 171 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 SPIN1Q9Y657 262 aaPredicted RBP5.3□□□□□ -1.56
VPS53-212ENST00000572259 ZNF780BQ9Y6R6 833 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 PCSK5Q92824 1860 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 A0A0A6YYD5 115 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 A0A1W2PPE3 182 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 GNG14A0A1W2PPG7 69 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 RAB19A4D1S5 217 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 C4orf51C9J302 202 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 G3V2L1 256 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 KLRC4-KLRK1H3BQV0 150 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 TEX46H3BTG2 121 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 RGS14O43566 566 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 NDUFS6O75380 124 aaKnown RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 HPRP00739 348 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 SLC35E2P0CK97 266 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 IL12BP29460 328 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 CD40LGP29965 261 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 SERPINB5P36952 375 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 MNDAP41218 407 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 SSR4P51571 173 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 HNRNPH2P55795 449 aaKnown RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 MLF1P58340 268 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 NAAAQ02083 359 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 GLYR1Q49A26 553 aaPredicted RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 MIDNQ504T8 468 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 ENTPD8Q5MY95 495 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 CEP85LQ5SZL2 805 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 NDUFAF5Q5TEU4 345 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 RPS27LQ71UM5 84 aaKnown RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 CRLF3Q8IUI8 442 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 C10orf107Q8IVU9 208 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 CHERPQ8IWX8 916 aaKnown RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 GPALPP1Q8IXQ4 340 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 SLC38A6Q8IZM9 456 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 SELENOHQ8IZQ5 122 aaKnown RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 RNF175Q8N4F7 328 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 ICA1LQ8NDH6 482 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 NFAM1Q8NET5 270 aaPredicted RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 THAP6Q8TBB0 222 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 TCP10LQ8TDR4 215 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 ANKRD9Q96BM1 317 aaPredicted RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 CCDC124Q96CT7 223 aaKnown RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 CSF3RQ99062 836 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 HINT2Q9BX68 163 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 TRIM4Q9C037 500 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 OR8D2Q9GZM6 311 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 RNF121Q9H920 327 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 ZBTB20Q9HC78 741 aaPredicted RBP5.29□□□□□ -1.56
VPS53-212ENST00000572259 SLC52A3Q9NQ40 469 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 PTTG2Q9NZH5 202 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 ADA2Q9NZK5 511 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 GNG12Q9UBI6 72 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 FLVCR2Q9UPI3 526 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 ASB4Q9Y574 426 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 ETV7Q9Y603 341 aa5.29□□□□□ -1.56
VPS53-212ENST00000572259 ICE1Q9Y2F5 2266 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 FLNBO75369 2602 aaKnown RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 LRRK2Q5S007 2527 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 A0A1W2PNV4 684 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 A0A1W2PP11 408 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 FBLL1A6NHQ2 334 aaKnown RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 H0YHG0 523 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 ITGB1BP1O14713 200 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 AZIN1O14977 448 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 ARPC2O15144 300 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 TM9SF1O15321 606 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 PCDH7O60245 1069 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 FGF17O60258 216 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 TSPAN2O60636 221 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 SPAG7O75391 227 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 EEDO75530 441 aaKnown RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 ETHE1O95571 254 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 SP1P08047 785 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 RPSAP08865 295 aaKnown RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 NAGAP17050 411 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 CSNK2A2P19784 350 aaPredicted RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 TCN1P20061 433 aaPredicted RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 MPIP34949 423 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 SFTPDP35247 375 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 PIGAP37287 484 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 NKX2-1P43699 371 aaPredicted RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 HLCSP50747 726 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 XKP51811 444 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 EFNA3P52797 238 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 CLDN17P56750 224 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 CLDN18P56856 261 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 IGLV3-21P80748 117 aaPredicted RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 MEF2DQ14814 521 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 OR1C1Q15619 314 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 IGFBP7Q16270 282 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 MTX3Q5HYI7 312 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 OTUD3Q5T2D3 398 aaPredicted RBP5.28□□□□□ -1.56
VPS53-212ENST00000572259 C6orf183Q5T699 404 aa5.28□□□□□ -1.56
VPS53-212ENST00000572259 FHL5Q5TD97 284 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms