RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CARD17Q5XLA6 110 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 BAIAP2L2Q6UXY1 529 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 HIST2H3AQ71DI3 136 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 ZNF627Q7L945 461 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 P4HA3Q7Z4N8 544 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 FGD2Q7Z6J4 655 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 LUZP2Q86TE4 346 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 CATSPERDQ86XM0 798 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 LURAP1LQ8IV03 231 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 CDH26Q8IXH8 852 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 APH1AQ96BI3 265 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 WDYHV1Q96HA8 205 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 GMPPAQ96IJ6 420 aaPredicted RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 KCNJ15Q99712 375 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 SLC30A2Q9BRI3 323 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 HES7Q9BYE0 225 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 DEFB127Q9H1M4 99 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 SLC6A15Q9H2J7 730 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 TPK1Q9H3S4 243 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 CALHM2Q9HA72 323 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 MOV10Q9HCE1 1003 aaKnown RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 SMURF1Q9HCE7 757 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 AKIP1Q9NQ31 210 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 CENPMQ9NSP4 180 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 DDX28Q9NUL7 540 aaKnown RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 UPB1Q9UBR1 384 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 OR52A1Q9UKL2 312 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 KLK13Q9UKR3 277 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 FBXL3Q9UKT7 428 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 DHDHQ9UQ10 334 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 LRP12Q9Y561 859 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 TIMM10BQ9Y5J6 103 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 SIRT4Q9Y6E7 314 aaPredicted RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 HEATR5AQ86XA9 2040 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 EXPH5Q8NEV8 1989 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 IGHV3-15A0A0B4J1V0 119 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 A0A1B0GVI7 797 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 K7ENP7 123 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 MTRF1O75570 445 aaKnown RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 CRHP06850 196 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 CALCBP10092 127 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 COX5BP10606 129 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 WT1P19544 449 aaPredicted RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 CFPP27918 469 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 ARR3P36575 388 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 SELENOPP49908 381 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 TPTEP56180 551 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 DEFA1P59665 94 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 DEFA3P59666 94 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 RPS11P62280 158 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS39-213ENST00000570062 PITPNAQ00169 270 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 SRYQ05066 204 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 MXD1Q05195 221 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 SLC36A2Q495M3 483 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 SOWAHCQ53LP3 525 aaPredicted RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 ELFN2Q5R3F8 820 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 HACD4Q5VWC8 232 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 INO80CQ6PI98 192 aaPredicted RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 DRAM2Q6UX65 266 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 RPTNQ6XPR3 784 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 LRRC28Q86X40 367 aaPredicted RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 ZNF100Q8IYN0 542 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 ELMOD2Q8IZ81 293 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 GDPD1Q8N9F7 314 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 OR52H1Q8NGJ2 320 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 SMAP2Q8WU79 429 aaPredicted RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 ROBO4Q8WZ75 1007 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 TRMT61AQ96FX7 289 aaKnown RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 MAP6Q96JE9 813 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 ZFP3Q96NJ6 502 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 DERL3Q96Q80 235 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 DCLRE1CQ96SD1 692 aaKnown RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 FOXB1Q99853 325 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 ATF6BQ99941 703 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 RGCCQ9H4X1 137 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 CRLF2Q9HC73 371 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 BRD7Q9NPI1 651 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 TMEM38BQ9NVV0 291 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 ASH2LQ9UBL3 628 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 PLEKHB1Q9UF11 243 aaPredicted RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 NUFIP1Q9UHK0 495 aaKnown RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 TUBD1Q9UJT1 453 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 CAMK2AQ9UQM7 478 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 KLHDC2Q9Y2U9 406 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 EMC9Q9Y3B6 208 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 GRIP1Q9Y3R0 1128 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 PMF1-BGLAPU3KQ54 211 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 V9GY05 133 aa7.03□□□□□ -1.28
VPS39-213ENST00000570062 SMG1Q96Q15 3661 aaKnown RBP7.03□□□□□ -1.28
VPS39-213ENST00000570062 NBEAQ8NFP9 2946 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 TRBV5-7A0A0A0MS05 114 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 A0A0U1RQV5 110 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 OR6C6A6NF89 314 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 FABP12A6NFH5 140 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 DHRS7CA6NNS2 312 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 RAMP1O60894 148 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SS18L1O75177 396 aaPredicted RBP7.02□□□□□ -1.29
VPS39-213ENST00000570062 MPZL1O95297 269 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 ADRB1P08588 477 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms