RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 POLR1DQ9Y2S0 133 aa17.98■□□□□ 0.47
CLN3-230ENST00000568076 IGHV3-15A0A0B4J1V0 119 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 LOC390937A0A1W2PQ73 354 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 M0R296 226 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 FABP7O15540 132 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 LINC00303Q3SY05 128 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 CCDC157Q569K6 752 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 LAMTOR1Q6IAA8 161 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 CT55Q8WUE5 264 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 ATG5Q9H1Y0 275 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 PNRC2Q9NPJ4 139 aaKnown RBP17.97■□□□□ 0.47
CLN3-230ENST00000568076 ASH2LQ9UBL3 628 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 PCSK5Q92824 1860 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 A0A0G2JMM0 328 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 A0A1W2PPB8 328 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 A0A1W2PRS3 328 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 MEGF11A6BM72 1044 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 A6NL46 340 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 KIR3DP1A8MWS1 328 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 LDLRAD4O15165 306 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 RER1O15258 196 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 RBBP9O75884 186 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 IGHEP01854 428 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 TCN2P20062 427 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 ANOS1P23352 680 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 VEGFCP49767 419 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 KCNMB1Q16558 191 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 PCGF3Q3KNV8 242 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 C1orf100Q5SVJ3 147 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 B3GNTL1Q67FW5 361 aaPredicted RBP17.97■□□□□ 0.47
CLN3-230ENST00000568076 JAGN1Q8N5M9 183 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 OR2AJ1Q8NGZ0 328 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 ADAT3Q96EY9 351 aaPredicted RBP17.97■□□□□ 0.47
CLN3-230ENST00000568076 UCN2Q96RP3 112 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 ZNF222Q9UK12 451 aa17.97■□□□□ 0.47
CLN3-230ENST00000568076 LNP1A1A4G5 178 aa17.96■□□□□ 0.47
CLN3-230ENST00000568076 ZNF878C9JN71 531 aa17.96■□□□□ 0.47
CLN3-230ENST00000568076 ARPC1BO15143 372 aaKnown RBP17.96■□□□□ 0.47
CLN3-230ENST00000568076 GABREP78334 506 aa17.96■□□□□ 0.47
CLN3-230ENST00000568076 TOMM20Q15388 145 aa17.96■□□□□ 0.47
CLN3-230ENST00000568076 PHYHD1Q5SRE7 291 aa17.96■□□□□ 0.47
CLN3-230ENST00000568076 C6orf15Q6UXA7 325 aaPredicted RBP17.96■□□□□ 0.47
CLN3-230ENST00000568076 OR4D6Q8NGJ1 314 aa17.96■□□□□ 0.47
CLN3-230ENST00000568076 TMEM41AQ96HV5 264 aa17.96■□□□□ 0.47
CLN3-230ENST00000568076 ZNF385AQ96PM9 386 aaKnown RBP17.96■□□□□ 0.47
CLN3-230ENST00000568076 SDK2Q58EX2 2172 aa17.96■□□□□ 0.47
CLN3-230ENST00000568076 A0A1B0GTI1 187 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 CBR3O75828 277 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 PSMA6P60900 246 aaKnown RBP17.95■□□□□ 0.46
CLN3-230ENST00000568076 ZNF813Q6ZN06 617 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 CREB3L2Q70SY1 520 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 FGD2Q7Z6J4 655 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 PIAS4Q8N2W9 510 aaPredicted RBP17.95■□□□□ 0.46
CLN3-230ENST00000568076 OR1J2Q8NGS2 313 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 GAL3ST1Q99999 423 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 NOX3Q9HBY0 568 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 GLTPQ9NZD2 209 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 MYEF2Q9P2K5 600 aaKnown RBP17.95■□□□□ 0.46
CLN3-230ENST00000568076 PCDHGA5Q9Y5G8 931 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 FREM2Q5SZK8 3169 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 A0A0J9YW62 118 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 MEIS3P1A6NDR6 274 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 SYT7O43581 403 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 SULT1A3P0DMM9 295 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 SULT1A4P0DMN0 295 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 GABRA1P14867 456 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 HSD11B1P28845 292 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 PRKXP51817 358 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 CHAF1BQ13112 559 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 OR10K2Q6IF99 312 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 Q6ZTK2 550 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 RAB11FIP2Q7L804 512 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 ADGRE4PQ86SQ3 457 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 NKAIN3Q8N8D7 197 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 OR4D10Q8NGI6 311 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 DACT3Q96B18 629 aaPredicted RBP17.95■□□□□ 0.46
CLN3-230ENST00000568076 SLA2Q9H6Q3 261 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 ZFP64Q9NPA5 681 aa17.95■□□□□ 0.46
CLN3-230ENST00000568076 AKR7A2O43488 359 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 SLC2A1P11166 492 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 ZNF17P17021 662 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 ZP1P60852 638 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 RHOUQ7L0Q8 258 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 CDH24Q86UP0 819 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 OR4C16Q8NGL9 310 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 OR51E1Q8TCB6 317 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 SGCZQ96LD1 299 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 SOX7Q9BT81 388 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 ZNF319Q9P2F9 582 aa17.94■□□□□ 0.46
CLN3-230ENST00000568076 TNFSF11O14788 317 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 TLX3O43711 291 aaPredicted RBP17.93■□□□□ 0.46
CLN3-230ENST00000568076 ICMTO60725 284 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 EIF1BO60739 113 aaKnown RBP17.93■□□□□ 0.46
CLN3-230ENST00000568076 NDUFB6O95139 128 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 CD63P08962 238 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 ANXA3P12429 323 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 BDKRB2P30411 391 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 PRSS3P35030 304 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 GNALP38405 381 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 RAD52P43351 418 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms