RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	HIST1H3A	P68431	136 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	MVK	Q03426	396 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	TSPAN31	Q12999	210 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	PSG7	Q13046	419 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	CDK5R2	Q13319	367 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	RIPK1	Q13546	671 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	TRIM25	Q14258	630 aa	Known RBP	5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	SLC36A3	Q495N2	470 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	CCDC92	Q53HC0	331 aa	Predicted RBP	5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	ZMAT1	Q5H9K5	638 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	MTX3	Q5HYI7	312 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	TMEM255A	Q5JRV8	349 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	SLC35F1	Q5T1Q4	408 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	HIST2H3PS2	Q5TEC6	136 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	OTP	Q5XKR4	325 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	PGBD2	Q6P3X8	592 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	LEG1	Q6P5S2	330 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	PGM2L1	Q6PCE3	622 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	IL17REL	Q6ZVW7	336 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	RFPL4B	Q6ZWI9	263 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	HIST2H3A	Q71DI3	136 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	DHFR2	Q86XF0	187 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR6V1	Q8N148	313 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	GJC3	Q8NFK1	279 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR5L1	Q8NGL2	311 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR4K13	Q8NH42	304 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	FAM81A	Q8TBF8	368 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	TMEM158	Q8WZ71	300 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	SLC7A6	Q92536	515 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	CCL17	Q92583	94 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	RAB1C	Q92928	201 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	CMBL	Q96DG6	245 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	ELMOD3	Q96FG2	381 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	TIMD4	Q96H15	378 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	TSSK2	Q96PF2	358 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	DCLRE1C	Q96SD1	692 aa	Known RBP	5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	NMNAT3	Q96T66	252 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	TSC22D3	Q99576	134 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	CDADC1	Q9BWV3	514 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	TRIM15	Q9C019	465 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	MUC13	Q9H3R2	512 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	NARFL	Q9H6Q4	476 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	SAP30L	Q9HAJ7	183 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	MSL2	Q9HCI7	577 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	ASH2L	Q9UBL3	628 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	CGGBP1	Q9UFW8	167 aa	Predicted RBP	5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	ATPIF1	Q9UII2	106 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	POLR1D	Q9Y2S0	133 aa		5.88	□□□□□ -1.47
SF3B3-209	ENST00000567635	STAB1	Q9NY15	2570 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	TCRBV5S2	A0A599	114 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR6C68	A6NDL8	312 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ZSCAN5B	A6NJL1	495 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	FAM157A	C9JC47	383 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	CLDN25	C9JDP6	229 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635		J3QW42	95 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	PHF1	O43189	567 aa	Predicted RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	CCNB2	O95067	398 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	GPANK1	O95872	356 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	GAST	P01350	101 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	HLA-DQA2	P01906	255 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	CD55	P08174	381 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	GAA	P10253	952 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	RAC2	P15153	192 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ATP6V1B2	P21281	511 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	TNFSF4	P23510	183 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	SRP14	P37108	136 aa	Known RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	RGS6	P49758	472 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	TNFAIP6	P98066	277 aa	Predicted RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	MS4A2	Q01362	244 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	SLC3A1	Q07837	685 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ECH1	Q13011	328 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	MEP1B	Q16820	701 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	RSPO1	Q2MKA7	263 aa	Predicted RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	FAM98B	Q52LJ0	330 aa	Known RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	AVPI1	Q5T686	147 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ZNF770	Q6IQ21	691 aa	Predicted RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	LCN8	Q6JVE9	175 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ACSM5	Q6NUN0	579 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	RPL13AP3	Q6NVV1	102 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	CORO6	Q6QEF8	472 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ZNF620	Q6ZNG0	422 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	PEG10	Q86TG7	708 aa	Known RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ZBTB46	Q86UZ6	589 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	GLCCI1	Q86VQ1	547 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	SLC26A10	Q8NG04	563 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR52L1	Q8NGH7	329 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR52E2	Q8NGJ4	325 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR4C15	Q8NGM1	316 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR2AJ1	Q8NGZ0	328 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	OR51F2	Q8NH61	342 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	TMEM186	Q96B77	213 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	THTPA	Q9BU02	230 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	HDHD2	Q9H0R4	259 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	POFUT1	Q9H488	388 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	MAGIX	Q9H6Y5	334 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	ZNF665	Q9H7R5	613 aa		5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	RPRD1B	Q9NQG5	326 aa	Known RBP	5.87	□□□□□ -1.47
SF3B3-209	ENST00000567635	HIF1AN	Q9NWT6	349 aa		5.87	□□□□□ -1.47

Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms