RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SPEF1Q9Y4P9 236 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 CHD3Q12873 2000 aaKnown RBP16.79■□□□□ 0.28
CLN3-225ENST00000566824 C5orf63A6NC05 138 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 ICMTO60725 284 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 MPV17P39210 176 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 PTH2RP49190 550 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 BLVRAP53004 296 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 EIF2B1Q14232 305 aaKnown RBP16.79■□□□□ 0.28
CLN3-225ENST00000566824 TESK1Q15569 626 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 MEPCEQ7L2J0 689 aaKnown RBP16.79■□□□□ 0.28
CLN3-225ENST00000566824 KRTAP1-3Q8IUG1 177 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 ABHD4Q8TB40 342 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 NRG4Q8WWG1 115 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 MRPL24Q96A35 216 aaKnown RBP16.79■□□□□ 0.28
CLN3-225ENST00000566824 SLAMF6Q96DU3 332 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 DOK1Q99704 481 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 ABHD6Q9BV23 337 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 PRRG3Q9BZD7 231 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 ZNF701Q9NV72 531 aaPredicted RBP16.79■□□□□ 0.28
CLN3-225ENST00000566824 STARD10Q9Y365 291 aa16.79■□□□□ 0.28
CLN3-225ENST00000566824 PRR32B1ATL7 298 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 MAD2L1BPQ15013 274 aaPredicted RBP16.78■□□□□ 0.28
CLN3-225ENST00000566824 EFNB3Q15768 340 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 NXNL2Q5VZ03 156 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 ZNF771Q7L3S4 317 aaPredicted RBP16.78■□□□□ 0.28
CLN3-225ENST00000566824 ZCCHC24Q8N2G6 241 aaKnown RBP16.78■□□□□ 0.28
CLN3-225ENST00000566824 RFLNBQ8N5W9 214 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 SLC25A40Q8TBP6 338 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 MARS2Q96GW9 593 aaKnown RBP16.78■□□□□ 0.28
CLN3-225ENST00000566824 ZNF582Q96NG8 517 aaPredicted RBP16.78■□□□□ 0.28
CLN3-225ENST00000566824 ATF6BQ99941 703 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 OR2J1Q9GZK6 312 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 PLK3Q9H4B4 646 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 SMPD3Q9NY59 655 aaPredicted RBP16.78■□□□□ 0.28
CLN3-225ENST00000566824 ATPIF1Q9UII2 106 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 EDARQ9UNE0 448 aa16.78■□□□□ 0.28
CLN3-225ENST00000566824 B9A039 149 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 F5H5K5 113 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 ABHD16AO95870 558 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 ACSM4P0C7M7 580 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 RAD52P43351 418 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 CDC42P60953 191 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 PPP1CBP62140 327 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 SLC34A1Q06495 639 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 RGS7BPQ6MZT1 257 aaPredicted RBP16.77■□□□□ 0.28
CLN3-225ENST00000566824 OR8J1Q8NGP2 316 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 GTF3AQ92664 365 aaKnown RBP16.77■□□□□ 0.28
CLN3-225ENST00000566824 FOXC2Q99958 501 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 CXXC4Q9H2H0 198 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 CENPMQ9NSP4 180 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 DDX28Q9NUL7 540 aaKnown RBP16.77■□□□□ 0.28
CLN3-225ENST00000566824 EIF3KQ9UBQ5 218 aaKnown RBP16.77■□□□□ 0.28
CLN3-225ENST00000566824 DUSP13Q9UII6 198 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 COPS3Q9UNS2 423 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 GMPPBQ9Y5P6 360 aa16.77■□□□□ 0.28
CLN3-225ENST00000566824 VPS13CQ709C8 3753 aa16.77■□□□□ 0.27
CLN3-225ENST00000566824 LOC100130705A0A1B0GUX0 176 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 ENTPD6O75354 484 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 APOL3O95236 402 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 IGHV4-39P01824 125 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 ZNF250P15622 560 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 PAX1P15863 534 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 GABRB1P18505 474 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 ALKBH6Q3KRA9 238 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 SLC16A9Q7RTY1 509 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 ENTHD1Q8IYW4 607 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 OTOSQ8NHW6 89 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 TTTY10Q9BZA0 68 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 GSX2Q9BZM3 304 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 BCL2L14Q9BZR8 327 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 CXorf56Q9H5V9 222 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 RNPEPL1Q9HAU8 725 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 ADGRL4Q9HBW9 690 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 IMPAD1Q9NX62 359 aa16.76■□□□□ 0.27
CLN3-225ENST00000566824 CELSR1Q9NYQ6 3014 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 SLC16A6O15403 523 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 TMCC2O75069 709 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 LY6HO94772 140 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 CLIC3O95833 236 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 OTX1P32242 354 aaPredicted RBP16.75■□□□□ 0.27
CLN3-225ENST00000566824 ALDH3B1P43353 468 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 PRKXP51817 358 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 RPS23P62266 143 aaKnown RBP16.75■□□□□ 0.27
CLN3-225ENST00000566824 SNRPGP62308 76 aaKnown RBP16.75■□□□□ 0.27
CLN3-225ENST00000566824 ECH1Q13011 328 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 GGTLC2Q14390 218 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 LCN1P1Q5VSP4 162 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 SHFQ7M4L6 423 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 PACRGLQ8N7B6 248 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 SYNPRQ8TBG9 265 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 KLF14Q8TD94 323 aaPredicted RBP16.75■□□□□ 0.27
CLN3-225ENST00000566824 THEM6Q8WUY1 208 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 RNF133Q8WVZ7 376 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 IPCEF1Q8WWN9 437 aaPredicted RBP16.75■□□□□ 0.27
CLN3-225ENST00000566824 TBCCD1Q9NVR7 557 aa16.75■□□□□ 0.27
CLN3-225ENST00000566824 H2AFY2Q9P0M6 372 aaPredicted RBP16.75■□□□□ 0.27
CLN3-225ENST00000566824 IGLV3-9A0A075B6K5 115 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 ALOX5APP20292 161 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 HTR1FP30939 366 aa16.74■□□□□ 0.27
CLN3-225ENST00000566824 OPRL1P41146 370 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms