RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CCDC197Q8NCU1 140 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 SDR9C7Q8NEX9 313 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 OR2Z1Q8NG97 314 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 OR52L1Q8NGH7 329 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 OR2AJ1Q8NGZ0 328 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 RAB39BQ96DA2 213 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 FAHD2AQ96GK7 314 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 TRIM15Q9C019 465 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 EGLN3Q9H6Z9 239 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 PTTG3PQ9NZH4 202 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 ATPIF1Q9UII2 106 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 LYVE1Q9Y5Y7 322 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.58■□□□□ 0.47e-9■■□□□ 13.5
CLN3-219ENST00000565778 ISPDA4D126 451 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 OR6C68A6NDL8 312 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 GASTP01350 101 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 HIST1H3AP68431 136 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 SRSF2Q01130 221 aaKnown RBP17.57■□□□□ 0.4
CLN3-219ENST00000565778 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.57■□□□□ 0.4
CLN3-219ENST00000565778 TRIM25Q14258 630 aaKnown RBP17.57■□□□□ 0.4
CLN3-219ENST00000565778 HIST2H3PS2Q5TEC6 136 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 ZNF620Q6ZNG0 422 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 HIST2H3AQ71DI3 136 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 ZBTB46Q86UZ6 589 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 SLC26A10Q8NG04 563 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 OR9Q2Q8NGE9 314 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 PITX2Q99697 317 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 COQ7Q99807 217 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 HDHD2Q9H0R4 259 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 FN3KQ9H479 309 aa17.57■□□□□ 0.4
CLN3-219ENST00000565778 TRAV20A0A0B4J274 112 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 CCNB2O95067 398 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 RAC2P15153 192 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 CALB2P22676 271 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 COX10Q12887 443 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 PPP1R8Q12972 351 aaKnown RBP17.56■□□□□ 0.4
CLN3-219ENST00000565778 HLXQ14774 488 aaPredicted RBP17.56■□□□□ 0.4
CLN3-219ENST00000565778 LIPNQ5VXI9 398 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 RPL13AP3Q6NVV1 102 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 Q6ZR03 302 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 ZNF771Q7L3S4 317 aaPredicted RBP17.56■□□□□ 0.4
CLN3-219ENST00000565778 LINC00346Q8IVM7 164 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 OR5AS1Q8N127 324 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 ATG16L2Q8NAA4 619 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 APOBEC3DQ96AK3 386 aaPredicted RBP17.56■□□□□ 0.4
CLN3-219ENST00000565778 GAL3ST1Q99999 423 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 BTBD10Q9BSF8 475 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 MUC13Q9H3R2 512 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 METRNQ9UJH8 293 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 CDH10Q9Y6N8 788 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 SVEP1Q4LDE5 3571 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 MXRA5Q9NR99 2828 aa17.56■□□□□ 0.4
CLN3-219ENST00000565778 TCRBV5S2A0A599 114 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 J3QW42 95 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 SURF4O15260 269 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 PLPP2O43688 288 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 SBK2P0C263 348 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 TNFRSF1AP19438 455 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 MS4A2Q01362 244 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 FAM98BQ52LJ0 330 aaKnown RBP17.55■□□□□ 0.4
CLN3-219ENST00000565778 MAGIXQ9H6Y5 334 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 UBAP1Q9NZ09 502 aa17.55■□□□□ 0.4
CLN3-219ENST00000565778 DNHD1Q96M86 4753 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 F5H5K5 113 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 IGHV2-5P01817 119 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 T-ENOLP0DO92 83 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 ZNF823P16415 610 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 MAGEA2P43356 314 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 ERFP50548 548 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 RSPO1Q2MKA7 263 aaPredicted RBP17.54■□□□□ 0.4
CLN3-219ENST00000565778 KRTAP24-1Q3LI83 254 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 OR2T2Q6IF00 324 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 LCN8Q6JVE9 175 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 SLC18B1Q6NT16 456 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 SHQ1Q6PI26 577 aaKnown RBP17.54■□□□□ 0.4
CLN3-219ENST00000565778 FBXW12Q6X9E4 464 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 CFAP77Q6ZQR2 320 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 RFLNBQ8N5W9 214 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 CYB561A3Q8NBI2 242 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 OR4C15Q8NGM1 316 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 LRGUKQ96M69 825 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 OCEL1Q9H607 264 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 METTL17Q9H7H0 456 aaPredicted RBP17.54■□□□□ 0.4
CLN3-219ENST00000565778 TMEM106BQ9NUM4 274 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 IL20Q9NYY1 176 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 IL19Q9UHD0 177 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 NPTNQ9Y639 398 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 U3KQV3 271 aa17.54■□□□□ 0.4
CLN3-219ENST00000565778 BHLHE40O14503 412 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 DEAF1O75398 565 aaPredicted RBP17.53■□□□□ 0.4
CLN3-219ENST00000565778 PYCR1P32322 319 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 ECH1Q13011 328 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 OR2T5Q6IEZ7 315 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 ZNF770Q6IQ21 691 aaPredicted RBP17.53■□□□□ 0.4
CLN3-219ENST00000565778 SLC27A4Q6P1M0 643 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 RASSF6Q6ZTQ3 369 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 AQP11Q8NBQ7 271 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 PROKR2Q8NFJ6 384 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 OR2T29Q8NH02 315 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 ITLN1Q8WWA0 313 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms