RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 LIPNQ5VXI9 398 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 PGBD2Q6P3X8 592 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 DNM1P34Q6PK57 102 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 C16orf89Q6UX73 402 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 CYP2R1Q6VVX0 501 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 ZNF620Q6ZNG0 422 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 CFAP77Q6ZQR2 320 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 ZBTB46Q86UZ6 589 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 JAZF1Q86VZ6 243 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 LINC00346Q8IVM7 164 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 ZDHHC21Q8IVQ6 265 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 OR5AS1Q8N127 324 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 SDR9C7Q8NEX9 313 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 GJC3Q8NFK1 279 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 OR2Z1Q8NG97 314 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 PTP4A1Q93096 173 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 MCUR1Q96AQ8 359 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 SIGLEC11Q96RL6 698 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 DCLRE1CQ96SD1 692 aaKnown RBP9.14□□□□□ -0.95
VPS39-208ENST00000564994 COQ7Q99807 217 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 GAL3ST1Q99999 423 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 IFT27Q9BW83 186 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 EGLN3Q9H6Z9 239 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 RPRD1BQ9NQG5 326 aaKnown RBP9.14□□□□□ -0.95
VPS39-208ENST00000564994 TUBG2Q9NRH3 451 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 TMEM106BQ9NUM4 274 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 PTTG3PQ9NZH4 202 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 ATPIF1Q9UII2 106 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 POLR1DQ9Y2S0 133 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 NPTNQ9Y639 398 aa9.14□□□□□ -0.95
VPS39-208ENST00000564994 TCRBV5S2A0A599 114 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 ISPDA4D126 451 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 DCTN3O75935 186 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 RENP00797 406 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 RAC2P15153 192 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 ZFP36P26651 326 aaKnown RBP9.13□□□□□ -0.95
VPS39-208ENST00000564994 GGT2P36268 569 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 HMGA2P52926 109 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 MXRA7P84157 204 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 SLC3A1Q07837 685 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 TSPAN31Q12999 210 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 KRTAP27-1Q3LI81 207 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 SPATS1Q496A3 300 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 SLC35F1Q5T1Q4 408 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 OR2T2Q6IF00 324 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 ZNF770Q6IQ21 691 aaPredicted RBP9.13□□□□□ -0.95
VPS39-208ENST00000564994 SLC18B1Q6NT16 456 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 PGM2L1Q6PCE3 622 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 FBXW12Q6X9E4 464 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 COLCA1Q6ZS62 124 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 FITM2Q8N6M3 262 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 ZNF283Q8N7M2 679 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 SEMA6DQ8NFY4 1073 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 OR9Q2Q8NGE9 314 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 OR52E2Q8NGJ4 325 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 OR4C15Q8NGM1 316 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 GNPDA2Q8TDQ7 276 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 ITLN1Q8WWA0 313 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 ZNRF4Q8WWF5 429 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 COG8Q96MW5 612 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 DDOQ99489 341 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 BTBD10Q9BSF8 475 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 PLA2G12AQ9BZM1 189 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 HDHD2Q9H0R4 259 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 OCEL1Q9H607 264 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 WDR76Q9H967 626 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 PNRC2Q9NPJ4 139 aaKnown RBP9.13□□□□□ -0.95
VPS39-208ENST00000564994 MRPL22Q9NWU5 206 aaKnown RBP9.13□□□□□ -0.95
VPS39-208ENST00000564994 UBAP1Q9NZ09 502 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 ACTR3BQ9P1U1 418 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 IL19Q9UHD0 177 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 TMCC3Q9ULS5 477 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 LYVE1Q9Y5Y7 322 aa9.13□□□□□ -0.95
VPS39-208ENST00000564994 A0A0G2JMP0 313 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 A0A0X1KG70 313 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 H0YL77 283 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 J3QW42 95 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 BHLHE40O14503 412 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 MLNRO43193 412 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 IDH3BO43837 385 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 RGS9O75916 674 aaPredicted RBP9.12□□□□□ -0.95
VPS39-208ENST00000564994 SBK2P0C263 348 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 PSKH1P11801 424 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 ADRA2CP18825 462 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 TNFSF4P23510 183 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 NOS3P29474 1203 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 IFNGR2P38484 337 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 MAGEA2P43356 314 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 RGS6P49758 472 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 PRSS12P56730 875 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 LCN2P80188 198 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS39-208ENST00000564994 PPP1R8Q12972 351 aaKnown RBP9.12□□□□□ -0.95
VPS39-208ENST00000564994 CLEC12AQ5QGZ9 265 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 ZNF362Q5T0B9 420 aaPredicted RBP9.12□□□□□ -0.95
VPS39-208ENST00000564994 SHQ1Q6PI26 577 aaKnown RBP9.12□□□□□ -0.95
VPS39-208ENST00000564994 NAA40Q86UY6 237 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.12□□□□□ -0.95
VPS39-208ENST00000564994 OR4M2Q8NGB6 313 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 OR10AD1Q8NGE0 317 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms