RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CGB2Q6NT52 195 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 FKBP9P1Q75LS8 142 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 HDXQ7Z353 690 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.12□□□□□ -0.15
CLN3-211ENST00000564091 KLBQ86Z14 1044 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 GLB1L2Q8IW92 636 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 SLC15A3Q8IY34 581 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 PARP8Q8N3A8 854 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 POU5F2Q8N7G0 328 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 FAM46AQ96IP4 442 aaKnown RBP14.12□□□□□ -0.15
CLN3-211ENST00000564091 NMNAT1Q9HAN9 279 aaPredicted RBP14.12□□□□□ -0.15
CLN3-211ENST00000564091 IL20RAQ9UHF4 553 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 LRCH1Q9Y2L9 728 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 MDFIC2A0A1B0GVS7 189 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 CLDN34H7C241 214 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 CXCR6O00574 342 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 PTP4A3O75365 173 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 SELEP16581 610 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 MTNR1AP48039 350 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 LSM6P62312 80 aaKnown RBP14.11□□□□□ -0.15
CLN3-211ENST00000564091 LIPEQ05469 1076 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 SLC27A4Q6P1M0 643 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 LEG1Q6P5S2 330 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 BTNL3Q6UXE8 466 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 LRRN1Q6UXK5 716 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 RRM2BQ7LG56 351 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 TSEN54Q7Z6J9 526 aaKnown RBP14.11□□□□□ -0.15
CLN3-211ENST00000564091 MOGAT3Q86VF5 341 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 OR8G5Q8NG78 346 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 OR13G1Q8NGZ3 307 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 RAB40AQ8WXH6 277 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 HSH2DQ96JZ2 352 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 TMEM246Q9BRR3 403 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 NUAK2Q9H093 628 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 WDR76Q9H967 626 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 MRGBPQ9NV56 204 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 FGFR1OP2Q9NVK5 253 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 ARMCX1Q9P291 453 aa14.11□□□□□ -0.15
CLN3-211ENST00000564091 IGHV2-70DA0A0C4DH43 119 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 F5H5P2 479 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 SOCS2O14508 198 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 MLNRO43193 412 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 NDUFB2O95178 105 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 SERPINA1P01009 418 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 OMGP23515 440 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 SDHAP31040 664 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 PMELP40967 661 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 CENPAP49450 140 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 PRSS12P56730 875 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 GNB2P62879 340 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 IL13RA1P78552 427 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 DBPQ10586 325 aaPredicted RBP14.1□□□□□ -0.15
CLN3-211ENST00000564091 MEP1BQ16820 701 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 TREML4Q6UXN2 200 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 FBXW12Q6X9E4 464 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 C9orf139Q6ZV77 190 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 PTCHD4Q6ZW05 846 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 CBLL1Q75N03 491 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 BHLHE23Q8NDY6 225 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 OR5L1Q8NGL2 311 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 SLC7A13Q8TCU3 470 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 UPRTQ96BW1 309 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 ZNF582Q96NG8 517 aaPredicted RBP14.1□□□□□ -0.15
CLN3-211ENST00000564091 TSSK2Q96PF2 358 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 NRIP3Q9NQ35 241 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 VSX1Q9NZR4 365 aaPredicted RBP14.1□□□□□ -0.15
CLN3-211ENST00000564091 MIOXQ9UGB7 285 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 POLR1DQ9Y2S0 133 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 IER3IP1Q9Y5U9 82 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 CAPN7Q9Y6W3 813 aa14.1□□□□□ -0.15
CLN3-211ENST00000564091 TRAV40A0A0B4J280 105 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 POM121CA8CG34 1229 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 IFNL4K9M1U5 179 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 GSTA4O15217 222 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 PLATP00750 562 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 MDKP21741 143 aaPredicted RBP14.09□□□□□ -0.15
CLN3-211ENST00000564091 CDKN2AP42771 156 aaKnown RBP14.09□□□□□ -0.15
CLN3-211ENST00000564091 SRP9P49458 86 aaKnown RBP14.09□□□□□ -0.15
CLN3-211ENST00000564091 RGS6P49758 472 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 GPR139Q6DWJ6 353 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 CORO6Q6QEF8 472 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 APOBEC3DQ96AK3 386 aaPredicted RBP14.09□□□□□ -0.15
CLN3-211ENST00000564091 DACT3Q96B18 629 aaPredicted RBP14.09□□□□□ -0.15
CLN3-211ENST00000564091 NEIL1Q96FI4 390 aaPredicted RBP14.09□□□□□ -0.15
CLN3-211ENST00000564091 SLC30A2Q9BRI3 323 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 NDEL1Q9GZM8 345 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 VIPAS39Q9H9C1 493 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 SIGLEC7Q9Y286 467 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 ENPP4Q9Y6X5 453 aa14.09□□□□□ -0.15
CLN3-211ENST00000564091 KIR2DS1A0A191URI9 304 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 J3QW42 95 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 DCTN6O00399 190 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 HLA-DPB1P04440 258 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 PPIAL4GP0DN37 164 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 SLC7A2P52569 658 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 FXYD6P3P58550 94 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 DEFA6Q01524 100 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 KCNMB1Q16558 191 aa14.08□□□□□ -0.16
CLN3-211ENST00000564091 RSPO1Q2MKA7 263 aaPredicted RBP14.08□□□□□ -0.16
CLN3-211ENST00000564091 ZNF404Q494X3 552 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms