RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CENPMQ9NSP4 180 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 HPF1Q9NWY4 346 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 HHLA2Q9UM44 414 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 OR14I1A6ND48 311 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 DISC1C4P0D8 188 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 SOX1O00570 391 aaPredicted RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 YKT6O15498 198 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 FADS1O60427 444 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 CD74P04233 296 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 RAB3AP20336 220 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 EIF1AXP47813 144 aaKnown RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 ROM1Q03395 351 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 FZD2Q14332 565 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 PAN3Q58A45 887 aaKnown RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 SHEQ5VZ18 495 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 ACOT7LQ6ZUV0 252 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 TTLL10Q6ZVT0 673 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 DCXRQ7Z4W1 244 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 OR52N5Q8NH56 324 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 GPR119Q8TDV5 335 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 THRSPQ92748 146 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 TGM7Q96PF1 710 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 TSNAXQ99598 290 aaKnown RBP11.83□□□□□ -0.52
CLN3-210ENST00000563874 LAT2Q9GZY6 243 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 S1PR5Q9H228 398 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 GAREM1Q9H706 876 aa11.83□□□□□ -0.52
CLN3-210ENST00000563874 WDR87Q6ZQQ6 2873 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 HSPB2A8KAH6 182 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 IGHV4-34P06331 123 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 ZBTB25P24278 435 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 HRH1P35367 487 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 RORAP35398 523 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 GNALP38405 381 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 CD96P40200 585 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 RABIFP47224 123 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 HSPB2Q16082 182 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 SGCBQ16585 318 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 GUCA2BQ16661 112 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 LYG2Q86SG7 212 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 TBL1XR1Q9BZK7 514 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 DNTTIP1Q9H147 329 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 SLC6A15Q9H2J7 730 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 CNTD2Q9H8S5 307 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 ATXN7L1Q9ULK2 861 aaPredicted RBP11.82□□□□□ -0.52
CLN3-210ENST00000563874 TMEM269A0A1B0GVZ9 245 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 C9orf170A2RU37 121 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 C5orf51A6NDU8 294 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 SULT2B1O00204 365 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 STK17BO94768 372 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 ERCC1P07992 297 aaPredicted RBP11.82□□□□□ -0.52
CLN3-210ENST00000563874 GNB3P16520 340 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 GABRG2P18507 467 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 GLO1Q04760 184 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 RAB12Q6IQ22 244 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 WDFY1Q8IWB7 410 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 INO80EQ8NBZ0 244 aaPredicted RBP11.82□□□□□ -0.52
CLN3-210ENST00000563874 THAP6Q8TBB0 222 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 ASB13Q8WXK3 278 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 EDAQ92838 391 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 TXNIPQ9H3M7 391 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 FBRSQ9HAH7 460 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 GDF2Q9UK05 429 aaPredicted RBP11.82□□□□□ -0.52
CLN3-210ENST00000563874 OR52A1Q9UKL2 312 aa11.82□□□□□ -0.52
CLN3-210ENST00000563874 COL4A2P08572 1712 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 IGHV5-51A0A0C4DH38 117 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 SPTY2D1-AS1A0A0U1RR47 76 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 C2orf72A6NCS6 295 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 H0YIG0 161 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 RAB27BO00194 218 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 LDLRAD4O15165 306 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 F12P00748 615 aaPredicted RBP11.81□□□□□ -0.52
CLN3-210ENST00000563874 GP1BBP13224 206 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 GPR85P60893 370 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 SERTAD2Q14140 314 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 ZNF345Q14585 488 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 TMPPEQ6ZT21 453 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 PUSL1Q8N0Z8 303 aaKnown RBP11.81□□□□□ -0.52
CLN3-210ENST00000563874 OR10Z1Q8NGY1 313 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 PAQR8Q8TEZ7 354 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 FGGYQ96C11 551 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 SLC46A1Q96NT5 459 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 SPACA5Q96QH8 159 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 FAM117AQ9C073 453 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 PTGES2Q9H7Z7 377 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 DHCR7Q9UBM7 475 aaKnown RBP11.81□□□□□ -0.52
CLN3-210ENST00000563874 LHX6Q9UPM6 363 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 TMED7-TICAM2A0A0A6YYA0 188 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 SLC25A4P12235 298 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 PGAM2P15259 253 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 FOXL2P58012 376 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 SRSF3P84103 164 aaKnown RBP11.81□□□□□ -0.52
CLN3-210ENST00000563874 SLC25A42Q86VD7 318 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 CBLN2Q8IUK8 224 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 C7orf61Q8IZ16 206 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 OR52N4Q8NGI2 321 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 ADIPOR1Q96A54 375 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 TCTN2Q96GX1 697 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 TMEM106CQ9BVX2 250 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 SLCO5A1Q9H2Y9 848 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 G6PC2Q9NQR9 355 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms