RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 HTR2CP28335 458 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 BDKRB2P30411 391 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 OTX1P32242 354 aaPredicted RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 PTGER4P35408 488 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 THBS4P35443 961 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 PSMB10P40306 273 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 BTG1P62324 171 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 HIST1H3AP68431 136 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 TGFBR3Q03167 851 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 TCF15Q12870 199 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 GPR176Q14439 515 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ZMYND11Q15326 602 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ZNF766Q5HY98 468 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 HIST2H3PS2Q5TEC6 136 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 B3GNTL1Q67FW5 361 aaPredicted RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 ZNF57Q68EA5 555 aaPredicted RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 OR2A2Q6IF42 318 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ANKRD16Q6P6B7 361 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 CCBE1Q6UXH8 406 aaPredicted RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 HIST2H3AQ71DI3 136 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 UTS2BQ765I0 119 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ZNF627Q7L945 461 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 SSX8Q7RTT4 187 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 OR2W3Q7Z3T1 314 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 AKAP14Q86UN6 197 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 C1orf174Q8IYL3 243 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 RFLNBQ8N5W9 214 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ZNRF4Q8WWF5 429 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ASB13Q8WXK3 278 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 AKAP1Q92667 903 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS39-204ENST00000561818 SPSB1Q96BD6 273 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 KLHDC3Q9BQ90 382 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 THAP7Q9BT49 309 aaPredicted RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 PBOV1Q9GZY1 135 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 DPAGT1Q9H3H5 408 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 PARD6AQ9NPB6 346 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 RHBDL2Q9NX52 303 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ASH2LQ9UBL3 628 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 KLHDC2Q9Y2U9 406 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 NOSIPQ9Y314 301 aaKnown RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 NUBP2Q9Y5Y2 271 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 SDK2Q58EX2 2172 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 AHCTF1Q8WYP5 2266 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 OTOGLQ3ZCN5 2332 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 GPR179Q6PRD1 2367 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 TRGV5A0A0B4J1U4 118 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 ZNF716A6NP11 495 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 B4DXG7 233 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 PRSS44E7EML9 344 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 XRCC2O43543 280 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 SGCEO43556 437 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 ZNF780AO75290 641 aaPredicted RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 DHRS3O75911 302 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 CHRM2P08172 466 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 NAT2P11245 290 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 GABRA1P14867 456 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 ARSBP15848 533 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 IL11P20809 199 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 PRKACBP22694 351 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 TUBG1P23258 451 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 RCVRNP35243 200 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 ARR3P36575 388 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 DDOSTP39656 456 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 KIR3DL2P43630 455 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 CX3CR1P49238 355 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 MEOX1P50221 254 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 LHX2P50458 406 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 NOVA1P51513 510 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 HCCSP53701 268 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 CLDN15P56746 228 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 PPIAP62937 165 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 FMODQ06828 376 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 MRPL49Q13405 166 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 PPA1Q15181 289 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 CNN3Q15417 329 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 C1orf100Q5SVJ3 147 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 Q6ZSR3 168 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 BTLAQ7Z6A9 289 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 YRDCQ86U90 279 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 LRRTM1Q86UE6 522 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 COMMD2Q86X83 199 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 SULF2Q8IWU5 870 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 ZNF100Q8IYN0 542 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 RDH10Q8IZV5 341 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 KDM8Q8N371 416 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 PRSS35Q8N3Z0 413 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 ZADH2Q8N4Q0 377 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 ZNF283Q8N7M2 679 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 OR4M1Q8NGD0 313 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 LGALS14Q8TCE9 139 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 SARAFQ96BY9 339 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 PGAM5Q96HS1 289 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 FOXB1Q99853 325 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 URM1Q9BTM9 101 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 EMC6Q9BV81 110 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 RBM24Q9BX46 236 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 CST11Q9H112 138 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 LDAHQ9H6V9 325 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 ZDHHC11Q9H8X9 412 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms