RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SPAG4Q9NPE6 437 aa16■□□□□ 0.15
VPS35-202ENST00000561713 DDX28Q9NUL7 540 aaKnown RBP16■□□□□ 0.15
VPS35-202ENST00000561713 TMEM106BQ9NUM4 274 aa16■□□□□ 0.15
VPS35-202ENST00000561713 NPTNQ9Y639 398 aa16■□□□□ 0.15
VPS35-202ENST00000561713 HKR1P10072 659 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 RHCEP18577 417 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 KITLGP21583 273 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 FPR2P25090 351 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 MSX2P35548 267 aaPredicted RBP15.99■□□□□ 0.15
VPS35-202ENST00000561713 LIPAP38571 399 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 SLC3A1Q07837 685 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 FOXL1Q12952 345 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 ZMYND11Q15326 602 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 PDLIM3Q53GG5 364 aaPredicted RBP15.99■□□□□ 0.15
VPS35-202ENST00000561713 GPR139Q6DWJ6 353 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 ADCK1Q86TW2 530 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 ST7LQ8TDW4 575 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 DHRS1Q96LJ7 313 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 OR2V2Q96R30 315 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 DIRC2Q96SL1 478 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 FUZQ9BT04 418 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 WDR76Q9H967 626 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 NTN4Q9HB63 628 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 MED4Q9NPJ6 270 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 DCAF13Q9NV06 445 aaKnown RBP15.99■□□□□ 0.15
VPS35-202ENST00000561713 SAMD4AQ9UPU9 718 aaKnown RBP15.99■□□□□ 0.15
VPS35-202ENST00000561713 LHFPL6Q9Y693 200 aa15.99■□□□□ 0.15
VPS35-202ENST00000561713 ZNF205O95201 554 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 GATA3P23771 443 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 MMP16P51512 607 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 OR2T2Q6IF00 324 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 LEG1Q6P5S2 330 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 ZER1Q7Z7L7 766 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 LINC00346Q8IVM7 164 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 C1orf174Q8IYL3 243 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 SIGLECL1Q8N7X8 197 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 BHLHE23Q8NDY6 225 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 ERMAPQ96PL5 475 aaPredicted RBP15.98■□□□□ 0.15
VPS35-202ENST00000561713 DUX5Q96PT3 197 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 SIGLEC11Q96RL6 698 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 MMP26Q9NRE1 261 aa15.98■□□□□ 0.15
VPS35-202ENST00000561713 VWFP04275 2813 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 IGLV1-36A0A0B4J1U3 117 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 NDUFAB1O14561 156 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 AHCYL1O43865 530 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 SEMG1P04279 462 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 TNFSF4P23510 183 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 RPS6KA3P51812 740 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 LSM6P62312 80 aaKnown RBP15.97■□□□□ 0.15
VPS35-202ENST00000561713 BTG1P62324 171 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 DEFA6Q01524 100 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 SMARCD3Q6STE5 483 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 DPY19L2P2Q6ZN68 376 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 ZNF283Q8N7M2 679 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 OR4K13Q8NH42 304 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 ZNF420Q8TAQ5 688 aaPredicted RBP15.97■□□□□ 0.15
VPS35-202ENST00000561713 CMTM5Q96DZ9 223 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 NMNAT3Q96T66 252 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 OR52D1Q9H346 318 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 PPP1R3CQ9UQK1 317 aa15.97■□□□□ 0.15
VPS35-202ENST00000561713 H0YL77 283 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 TXNDC12O95881 172 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 SELEP16581 610 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 KRT72Q14CN4 511 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 CFAP77Q6ZQR2 320 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 JAZF1Q86VZ6 243 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 ATG16L2Q8NAA4 619 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 DEFB108BQ8NET1 73 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 SDR9C7Q8NEX9 313 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 HAVCR1Q96D42 359 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 WACQ9BTA9 647 aa15.96■□□□□ 0.15
VPS35-202ENST00000561713 KRCC1Q9NPI7 259 aaPredicted RBP15.96■□□□□ 0.15
VPS35-202ENST00000561713 RPRD1BQ9NQG5 326 aaKnown RBP15.96■□□□□ 0.15
VPS35-202ENST00000561713 ARPC2O15144 300 aa15.95■□□□□ 0.14
VPS35-202ENST00000561713 GADD45GO95257 159 aa15.95■□□□□ 0.14
VPS35-202ENST00000561713 CYB5R3P00387 301 aaPredicted RBP15.95■□□□□ 0.14
VPS35-202ENST00000561713 HIST1H1CP16403 213 aaKnown RBP15.95■□□□□ 0.14
VPS35-202ENST00000561713 TUSC1Q2TAM9 212 aa15.95■□□□□ 0.14
VPS35-202ENST00000561713 TREML4Q6UXN2 200 aa15.95■□□□□ 0.14
VPS35-202ENST00000561713 RBMS3Q6XE24 437 aaKnown RBP15.95■□□□□ 0.14
VPS35-202ENST00000561713 OR6V1Q8N148 313 aa15.95■□□□□ 0.14
VPS35-202ENST00000561713 SPICQ8N5J4 248 aa15.95■□□□□ 0.14
VPS35-202ENST00000561713 SAMD8Q96LT4 415 aa15.95■□□□□ 0.14
VPS35-202ENST00000561713 IFT27Q9BW83 186 aa15.95■□□□□ 0.14
VPS35-202ENST00000561713 SRA1Q9HD15 236 aaKnown RBP15.95■□□□□ 0.14
VPS35-202ENST00000561713 PRKDCP78527 4128 aaKnown RBP15.95■□□□□ 0.14
VPS35-202ENST00000561713 DNAJC9-AS1A6NH13 148 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 TRAPPC2LH3BP13 241 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 MLNRO43193 412 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 OR10H3O60404 316 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 GMNNO75496 209 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 FOXH1O75593 365 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 RAC2P15153 192 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 TNFRSF1AP19438 455 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 PRTN3P24158 256 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 PRDX6P30041 224 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 SLC6A6P31641 620 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 KCNMB1Q16558 191 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 DNM1P34Q6PK57 102 aa15.94■□□□□ 0.14
VPS35-202ENST00000561713 KLHL36Q8N4N3 616 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms