RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 SH3GL3Q99963 347 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 HOPXQ9BPY8 73 aaPredicted RBP3.65□□□□□ -1.83
SPG11-211ENST00000558561 FUZQ9BT04 418 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 TAPBPLQ9BX59 468 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 CXXC4Q9H2H0 198 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 SLCO5A1Q9H2Y9 848 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 CRLF2Q9HC73 371 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 DCAF13Q9NV06 445 aaKnown RBP3.65□□□□□ -1.83
SPG11-211ENST00000558561 VNN3Q9NY84 501 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 B3GNT2Q9NY97 397 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 MRPL39Q9NYK5 338 aaKnown RBP3.65□□□□□ -1.83
SPG11-211ENST00000558561 ZNF226Q9NYT6 803 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 TAS2R1Q9NYW7 299 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 CISD1Q9NZ45 108 aaKnown RBP3.65□□□□□ -1.83
SPG11-211ENST00000558561 NLKQ9UBE8 527 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 ABCD2Q9UBJ2 740 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 FZR1Q9UM11 496 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 B3GALT5Q9Y2C3 310 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 ARL2BPQ9Y2Y0 163 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 TNFRSF18Q9Y5U5 241 aa3.65□□□□□ -1.83
SPG11-211ENST00000558561 MAGED1Q9Y5V3 778 aaPredicted RBP3.65□□□□□ -1.83
SPG11-211ENST00000558561 SPIN1Q9Y657 262 aaPredicted RBP3.65□□□□□ -1.83
SPG11-211ENST00000558561 SETD2Q9BYW2 2564 aaPredicted RBP3.64□□□□□ -1.83
SPG11-211ENST00000558561 ABCA1O95477 2261 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 MALRD1Q5VYJ5 2156 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 IGLV5-39A0A0G2JS06 123 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 LOC102725191A0A1B0GVB3 256 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SH3PXD2BA1X283 911 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 BBIP1A8MTZ0 92 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ATP6V1G2-DDX39BF2Z307 99 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 LYNX1G3V0Z9 82 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 DCTN6O00399 190 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 GPR171O14626 319 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 HS3ST1O14792 307 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 RNF13O43567 381 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 FMO6PO60774 539 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 OR5F1O95221 314 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 MPZL1O95297 269 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SLC2A10O95528 541 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 NPPAP01160 153 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 IGHV4-39P01824 125 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 RAF1P04049 648 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 QDPRP09417 244 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 TSPAN19P0C672 248 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 CECR9P0C854 216 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 LYNX1P0DP58 116 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 UMPSP11172 480 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 PSG1P11464 419 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 CD99P14209 185 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 B4GALT1P15291 398 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 NQO1P15559 274 aaKnown RBP3.64□□□□□ -1.83
SPG11-211ENST00000558561 DNASE1P24855 282 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 PRDX6P30041 224 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 TNFSF8P32971 234 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ACVR1BP36896 505 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 GPR4P46093 362 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 PCYT1AP49585 367 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ERVS71-1P61550 626 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ERVK-25P63136 954 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 PRKCDQ05655 676 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 TNK1Q13470 666 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 C1DQ13901 141 aaKnown RBP3.64□□□□□ -1.83
SPG11-211ENST00000558561 MAPRE2Q15555 327 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ZSWIM7Q19AV6 140 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ODF3L2Q3SX64 289 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ZNF672Q499Z4 452 aaPredicted RBP3.64□□□□□ -1.83
SPG11-211ENST00000558561 SPRNQ5BIV9 151 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 BEX5Q5H9J7 111 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 TIMM23BQ5SRD1 257 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ARMC4Q5T2S8 1044 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 TMEM268Q5VZI3 342 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 HACD2Q6Y1H2 254 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SPNS3Q6ZMD2 512 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 COLCA1Q6ZS62 124 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ZER1Q7Z7L7 766 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 RANBP3LQ86VV4 465 aaPredicted RBP3.64□□□□□ -1.83
SPG11-211ENST00000558561 TGIF2LYQ8IUE0 185 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ZNF584Q8IVC4 421 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 LRRC18Q8N456 261 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SETD9Q8NE22 299 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 OR13C2Q8NGS9 318 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SLC7A13Q8TCU3 470 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SCARB1Q8WTV0 552 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SMAP2Q8WU79 429 aaPredicted RBP3.64□□□□□ -1.83
SPG11-211ENST00000558561 NSMAFQ92636 917 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 GTF3AQ92664 365 aaKnown RBP3.64□□□□□ -1.83
SPG11-211ENST00000558561 PROX1Q92786 737 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 TMEM54Q969K7 222 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SLC35B4Q969S0 331 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 MCHR2Q969V1 340 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 FAM162AQ96A26 154 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 ZHX1-C8orf76Q96EF9 292 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SGTBQ96EQ0 304 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 DTNBP1Q96EV8 351 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 RADILQ96JH8 1075 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 Q96M85 177 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 TSSK2Q96PF2 358 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 TSPAN32Q96QS1 320 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 SEPHS2Q99611 448 aa3.64□□□□□ -1.83
SPG11-211ENST00000558561 FOXC2Q99958 501 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms