RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, human

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDLR-209	ENST00000558528	SLC35D3	Q5M8T2	416 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	LCN1P1	Q5VSP4	162 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	NXNL2	Q5VZ03	156 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	FCRLB	Q6BAA4	426 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	TUBA3E	Q6PEY2	450 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	ZNF773	Q6PK81	442 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	IGFL2	Q6UWQ7	119 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	C16orf47	Q6ZP98	133 aa	Predicted RBP	4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	TMPPE	Q6ZT21	453 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	NANOGNB	Q7Z5D8	188 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	SLC22A16	Q86VW1	577 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	ENTHD1	Q8IYW4	607 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	STX19	Q8N4C7	294 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	ZADH2	Q8N4Q0	377 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	TMEM217	Q8N7C4	229 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	TCEANC	Q8N8B7	351 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	WDSUB1	Q8N9V3	476 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	BPIFB6	Q8NFQ5	453 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	PFN4	Q8NHR9	129 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	HAVCR2	Q8TDQ0	301 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	ST7L	Q8TDW4	575 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	FAM216A	Q8WUB2	273 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	PSMF1	Q92530	271 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	SAMD8	Q96LT4	415 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	JSRP1	Q96MG2	331 aa	Predicted RBP	4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	TNFRSF13C	Q96RJ3	184 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	TUBA1C	Q9BQE3	449 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	FAM192A	Q9GZU8	254 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	UBQLN3	Q9H347	655 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	FANCF	Q9NPI8	374 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	MEPE	Q9NQ76	525 aa	Predicted RBP	4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	CMC2	Q9NRP2	79 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	SLC35D1	Q9NTN3	355 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	MRPL39	Q9NYK5	338 aa	Known RBP	4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	GPR83	Q9NYM4	423 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	UBAP1	Q9NZ09	502 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	WARS2	Q9UGM6	360 aa	Known RBP	4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	NDRG3	Q9UGV2	375 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	MOK	Q9UQ07	419 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	NTNG1	Q9Y2I2	539 aa		4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	MRPS18B	Q9Y676	258 aa	Known RBP	4.54	□□□□□ -1.68
LDLR-209	ENST00000558528	ANKHD1	Q8IWZ3	2542 aa	Known RBP	4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	APC	P25054	2843 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528		A0A0B4J293	547 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	LOC102725191	A0A1B0GVB3	256 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	SMIM31	A0A1B0GVY4	71 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	TMEM72	A0PK05	275 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	WIPF3	A6NGB9	483 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	MKRN2OS	H3BPM6	223 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	SLC1A7	O00341	560 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	KPNA4	O00629	521 aa	Predicted RBP	4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	BHLHE40	O14503	412 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	CDC42EP2	O14613	210 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	SURF4	O15260	269 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	AKAP8	O43823	692 aa	Known RBP	4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	SSX5	O60225	188 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	NME2P1	O60361	137 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	FZD7	O75084	574 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	TRAPPC6A	O75865	159 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	CEACAM4	O75871	244 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	SOX14	O95416	240 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	PMS2P2	O95744	297 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	CLIC3	O95833	236 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	TXNDC12	O95881	172 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	ACTL6A	O96019	429 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	BGLAP	P02818	100 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	HPN	P05981	417 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	GNAO1	P09471	354 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	TSPAN19	P0C672	248 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	ADORA3	P0DMS8	318 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	CCL3	P10147	92 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	PRKAR1A	P10644	381 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	MYL12A	P19105	171 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	AHCY	P23526	432 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	GDF1	P27539	372 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	DCK	P27707	260 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	GUCA1A	P43080	201 aa	Predicted RBP	4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	RPS5	P46782	204 aa	Known RBP	4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	SOX2	P48431	317 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	CAMLG	P49069	296 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	DAP3	P51398	398 aa	Known RBP	4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	RAB40B	Q12829	278 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	FOXF1	Q12946	379 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	C1D	Q13901	141 aa	Known RBP	4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	PON3	Q15166	354 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	ZNF239	Q16600	458 aa	Known RBP	4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	DEFB109B	Q30KR1	87 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	SYT14P1	Q58G82	188 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	PRAMEF20	Q5VT98	475 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	RAET1L	Q5VY80	246 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	RNLS	Q5VYX0	342 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	TMEM225	Q6GV28	225 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	OR5M10	Q6IEU7	315 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	ACSM5	Q6NUN0	579 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	DNM1P34	Q6PK57	102 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	PAQR6	Q6TCH4	344 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	IGFL3	Q6UXB1	125 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	WDR88	Q6ZMY6	472 aa		4.53	□□□□□ -1.68
LDLR-209	ENST00000558528	PQLC2	Q6ZP29	291 aa		4.53	□□□□□ -1.68

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