RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PTHP01270 115 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 CRYAAP02489 173 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 OR2T7P0C7T2 308 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 FAM157BP0CG42 384 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 GALK2Q01415 458 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 TLE4Q04727 773 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 RAB40BQ12829 278 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 MSMPQ1L6U9 139 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 TBC1D28Q2M2D7 210 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 KRT80Q6KB66 452 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF322Q6U7Q0 402 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF704Q6ZNC4 412 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF101Q8IZC7 436 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 OR2T27Q8NH04 317 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 C14orf79Q96F83 325 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 COPS4Q9BT78 406 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 CDH20Q9HBT6 801 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 PLCXD1Q9NUJ7 323 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 PAK1IP1Q9NWT1 392 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-227ENST00000557269 PSORS1C1Q9UIG5 152 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 PKDREJQ9NTG1 2253 aa11.07□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF878C9JN71 531 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 SLC1A7O00341 560 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 GPRIN2O60269 458 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 FAM20BO75063 409 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 IGHA1P01876 353 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 ACSM4P0C7M7 580 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 NR4A1P22736 598 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 OTX1P32242 354 aaPredicted RBP11.06□□□□□ -0.64
SHMT2-227ENST00000557269 PRKXP51817 358 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 KRTAP10-9P60411 292 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 ERVS71-1P61550 626 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 NKX6-1P78426 367 aaPredicted RBP11.06□□□□□ -0.64
SHMT2-227ENST00000557269 ROM1Q03395 351 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 ECH1Q13011 328 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 KLHL22Q53GT1 634 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF684Q5T5D7 378 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 PLEKHG7Q6ZR37 379 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 RFPL4BQ6ZWI9 263 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 LHFPL3Q86UP9 236 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 IL17RDQ8NFM7 739 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 OR1J2Q8NGS2 313 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 AKAP1Q92667 903 aaKnown RBP eCLIP11.06□□□□□ -0.64
SHMT2-227ENST00000557269 C4orf45Q96LM5 186 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 OR8B4Q96RC9 309 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 KCNJ15Q99712 375 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 POFUT1Q9H488 388 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 ELOVL3Q9HB03 270 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 FGF20Q9NP95 211 aaPredicted RBP11.06□□□□□ -0.64
SHMT2-227ENST00000557269 FKBP14Q9NWM8 211 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 MRM2Q9UI43 246 aaKnown RBP11.06□□□□□ -0.64
SHMT2-227ENST00000557269 ATPIF1Q9UII2 106 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 GRIP1Q9Y3R0 1128 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 LRP12Q9Y561 859 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 ATP23Q9Y6H3 246 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 RTTNQ86VV8 2226 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 PTPN13Q12923 2485 aa11.06□□□□□ -0.64
SHMT2-227ENST00000557269 CADP27708 2225 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 DAPL1A0PJW8 107 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 SMPD2O60906 423 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 ABHD16AO95870 558 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 H2BFMP0C1H6 154 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 SLC2A1P11166 492 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 THBS4P35443 961 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 ETV1P50549 477 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 UCP2P55851 309 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 TAF13Q15543 124 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF672Q499Z4 452 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-227ENST00000557269 VHLLQ6RSH7 139 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 AHSA2Q719I0 299 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 KRT77Q7Z794 578 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 TMEM200AQ86VY9 491 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 ACBD7Q8N6N7 88 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 ASB17Q8WXJ9 295 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 RNF166Q96A37 237 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-227ENST00000557269 MNTQ99583 582 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 KCNS3Q9BQ31 491 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 CLEC4MQ9H2X3 399 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-227ENST00000557269 Q9H521 79 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 PLEKHF2Q9H8W4 249 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 ERVK13-1Q9NX77 482 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 STARD10Q9Y365 291 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 LRRC42Q9Y546 428 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 TMEM14AQ9Y6G1 99 aa11.05□□□□□ -0.64
SHMT2-227ENST00000557269 HRNRQ86YZ3 2850 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-227ENST00000557269 PTGES3LE9PB15 166 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 M0R135 149 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ICMTO60725 284 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 SRSF10O75494 262 aaKnown RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 GOSR1O95249 250 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 FADS2O95864 444 aaKnown RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 PNPP00491 289 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 LIMS3P0CW19 117 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 LIMS4P0CW20 117 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 PIPP12273 146 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 CRHBPP24387 322 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 PCSK6P29122 969 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 C21orf33P30042 268 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 CX3CR1P49238 355 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 TPTEP56180 551 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms