RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 PDLIM4P50479 330 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 SNAPC1Q16533 368 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 NKPD1Q17RQ9 610 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 RSPO1Q2MKA7 263 aaPredicted RBP9.15□□□□□ -0.94
LINC00239-201ENST00000556973 KRTAP27-1Q3LI81 207 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 SLC35D3Q5M8T2 416 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 PLBD1Q6P4A8 553 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 TMEM154Q6P9G4 183 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 RFPL4BQ6ZWI9 263 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 BIVMQ86UB2 503 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 CPOQ8IVL8 374 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 ZNF525Q8N782 197 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 OR6K6Q8NGW6 343 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 SNX33Q8WV41 574 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 SLC7A6Q92536 515 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 FAM168AQ92567 244 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 APOBEC3DQ96AK3 386 aaPredicted RBP9.15□□□□□ -0.94
LINC00239-201ENST00000556973 MAP6Q96JE9 813 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 COX4I2Q96KJ9 171 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 ATF6BQ99941 703 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 PKP2Q99959 881 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 RBM4BQ9BQ04 359 aaKnown RBP9.15□□□□□ -0.94
LINC00239-201ENST00000556973 REG4Q9BYZ8 158 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 PRRG3Q9BZD7 231 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 OR51V1Q9H2C8 321 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 MED20Q9H944 212 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 PNRC2Q9NPJ4 139 aaKnown RBP9.15□□□□□ -0.94
LINC00239-201ENST00000556973 HINT3Q9NQE9 182 aaKnown RBP9.15□□□□□ -0.94
LINC00239-201ENST00000556973 CYSLTR2Q9NS75 346 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 TVP23BQ9NYZ1 205 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 STARD10Q9Y365 291 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 COMMD3-BMI1R4GMX3 469 aa9.15□□□□□ -0.94
LINC00239-201ENST00000556973 ARID1AO14497 2285 aa9.15□□□□□ -0.95
LINC00239-201ENST00000556973 MED13LQ71F56 2210 aa9.15□□□□□ -0.95
LINC00239-201ENST00000556973 PLSCR5A0PG75 271 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 ZAR1LA6NP61 321 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 RNF223E7ERA6 249 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 SMAD7O15105 426 aaKnown RBP9.14□□□□□ -0.95
LINC00239-201ENST00000556973 PRODHO43272 600 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 MITFO75030 526 aaPredicted RBP9.14□□□□□ -0.95
LINC00239-201ENST00000556973 SPARCP09486 303 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 NAT2P11245 290 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 DAOP14920 347 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 SLC25A16P16260 332 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 IGFBP5P24593 272 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 MPV17P39210 176 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 RPS27P42677 84 aaKnown RBP9.14□□□□□ -0.95
LINC00239-201ENST00000556973 MMP15P51511 669 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 TPTEP56180 551 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 EFNB1P98172 346 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 PPP2R2BQ00005 443 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 PSG7Q13046 419 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 MAD2L1BPQ15013 274 aaPredicted RBP9.14□□□□□ -0.95
LINC00239-201ENST00000556973 PCGF3Q3KNV8 242 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 SPATA46Q5T0L3 261 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 LYPD4Q6UWN0 246 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 COLCA1Q6ZS62 124 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 RHOUQ7L0Q8 258 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 SHFQ7M4L6 423 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 DCXRQ7Z4W1 244 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 ZNF786Q8N393 782 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 ZNF540Q8NDQ6 660 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 C10orf105Q8TEF2 133 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 UBASH3BQ8TF42 649 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 SPTSSAQ969W0 71 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 HAVCR1Q96D42 359 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 INTS14Q96SY0 518 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 CIB1Q99828 191 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 TPK1Q9H3S4 243 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 MARCH7Q9H992 704 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 S100A14Q9HCY8 104 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 DDX28Q9NUL7 540 aaKnown RBP9.14□□□□□ -0.95
LINC00239-201ENST00000556973 NKIRAS2Q9NYR9 191 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 CGGBP1Q9UFW8 167 aaPredicted RBP9.14□□□□□ -0.95
LINC00239-201ENST00000556973 TMEFF2Q9UIK5 374 aaPredicted RBP9.14□□□□□ -0.95
LINC00239-201ENST00000556973 CCDC168Q8NDH2 2452 aa9.14□□□□□ -0.95
LINC00239-201ENST00000556973 USF3Q68DE3 2245 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 IGHV4-30-2A0A087WSY4 118 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 SAC3D1A6NKF1 404 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 F5H5K5 113 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 ACSM4P0C7M7 580 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 SLC2A5P22732 501 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 ZNF81P51508 661 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 EIF2B1Q14232 305 aaKnown RBP9.13□□□□□ -0.95
LINC00239-201ENST00000556973 TAF13Q15543 124 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 ALKBH6Q3KRA9 238 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 KLHL12Q53G59 568 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 SLX4IPQ5VYV7 408 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 C12orf73Q69YU5 71 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 CXXC5Q7LFL8 322 aaKnown RBP9.13□□□□□ -0.95
LINC00239-201ENST00000556973 NAA40Q86UY6 237 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 ERI1Q8IV48 349 aaKnown RBP9.13□□□□□ -0.95
LINC00239-201ENST00000556973 TIGD4Q8IY51 512 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 OR6N2Q8NGY6 317 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 CMBLQ96DG6 245 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 SLAMF6Q96DU3 332 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 TEAD3Q99594 435 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 C1QTNF5Q9BXJ0 243 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 ZDHHC8Q9ULC8 765 aa9.13□□□□□ -0.95
LINC00239-201ENST00000556973 CELSR1Q9NYQ6 3014 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms