RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 NCMAPQ5T1S8 102 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 PTCRAQ6ISU1 281 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-214ENST00000552783 CBLN3Q6UW01 205 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 NPSR1Q6W5P4 371 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 Q6ZSR6 202 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 SLC16A9Q7RTY1 509 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 MARCH3Q86UD3 253 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 BAP18Q8IXM2 172 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 PRR22Q8IZ63 422 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 OR4K17Q8NGC6 315 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 OR4D6Q8NGJ1 314 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 FAM3CQ92520 227 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 C4orf45Q96LM5 186 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 MAP3K3Q99759 626 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF251Q9BRH9 671 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 TIMM29Q9BSF4 260 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 SEC11CQ9BY50 192 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 TPSD1Q9BZJ3 242 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 CHRDQ9H2X0 955 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 MKKSQ9NPJ1 570 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-214ENST00000552783 COMMD9Q9P000 198 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 LAMP5Q9UJQ1 280 aa4.36□□□□□ -1.71
LIMA1-214ENST00000552783 MRPS33Q9Y291 106 aaKnown RBP4.36□□□□□ -1.71
LIMA1-214ENST00000552783 YBX2Q9Y2T7 364 aaKnown RBP4.36□□□□□ -1.71
LIMA1-214ENST00000552783 A0A087WUJ7 227 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 C5orf51A6NDU8 294 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CYR61O00622 381 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SLC17A2O00624 439 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 UBE2CO00762 179 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SRPX2O60687 465 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 LRP3O75074 770 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 OR6A2O95222 327 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 AGR2O95994 175 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 IFNA4P05014 189 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ARG1P05089 322 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CRHP06850 196 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CD14P08571 375 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 MELTFP08582 738 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SMIM10L1P0DMW3 83 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 S1PR1P21453 382 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 NME2P22392 152 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CPT2P23786 658 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 AKT2P31751 481 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 HRH1P35367 487 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 LSSP48449 732 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 GPR143P51810 404 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 OR2B8PP59922 312 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CTXN1P60606 82 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CLINT1Q14677 625 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ELOCQ15369 112 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RAB11BQ15907 218 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM196Q5HYL7 178 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ULK3Q6PHR2 472 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CLEC9AQ6UXN8 241 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 FAM220AQ7Z4H9 259 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 LYG2Q86SG7 212 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SLC25A42Q86VD7 318 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 JAZF1Q86VZ6 243 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CDRT4Q8N9R6 151 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 LRRC75AQ8NAA5 344 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM229BQ8NBD8 167 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 INO80EQ8NBZ0 244 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RCBTB1Q8NDN9 531 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SLC30A7Q8NEW0 376 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 FLVCR1-AS1Q8TAF5 88 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 GPR148Q8TDV2 347 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 MITD1Q8WV92 249 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SECTM1Q8WVN6 248 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ARL11Q969Q4 196 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SMIM10Q96HG1 83 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 TSPAN32Q96QS1 320 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 LPAR4Q99677 370 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CMKLR1Q99788 373 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RTN4RQ9BZR6 473 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ELOVL3Q9HB03 270 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 TEX13DA0A0J9YY54 714 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 A0A1W2PPH5 198 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 IFITM10A6NMD0 228 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 C2orf74A8MZ97 194 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CLDN4O14493 209 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ARPC3O15145 178 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SNAPC5O75971 98 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CYB5AP00167 134 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 HEXAP06865 529 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 KLK3P07288 261 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 OR8U9P0C7N5 309 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RNF224P0DH78 156 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ANOS1P23352 680 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RORAP35398 523 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 GRK6P43250 576 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 HHEXQ03014 270 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PJVKQ0ZLH3 352 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 AIMP2Q13155 320 aaKnown RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CD226Q15762 336 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 HLA-DQA1Q5Y7H0 255 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM225Q6GV28 225 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PAPD4Q6PIY7 484 aaKnown RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF550Q7Z398 422 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 FJX1Q86VR8 437 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PNLDC1Q8NA58 520 aaKnown RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms