RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 NICN1Q9BSH3 213 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 GPR173Q9NS66 373 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 FOXS1O43638 330 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 SNAPC5O75971 98 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 MPZL1O95297 269 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 RGS19P49795 217 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 CD276Q5ZPR3 534 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 PWWP2BQ6NUJ5 590 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 OR1M1Q8NGA1 313 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 OTOSQ8NHW6 89 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 C10orf90Q96M02 699 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 FAM86C1Q9NVL1 165 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 MED12Q93074 2177 aa14.69□□□□□ -0.06
CUX1-213ENST00000549414 OR8U9P0C7N5 309 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 NAGAP17050 411 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 PI3P19957 117 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 ZNF141Q15928 474 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 WDR38Q5JTN6 314 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 ZNF770Q6IQ21 691 aaPredicted RBP14.68□□□□□ -0.06
CUX1-213ENST00000549414 C6orf15Q6UXA7 325 aaPredicted RBP14.68□□□□□ -0.06
CUX1-213ENST00000549414 SPACA9Q96E40 222 aaPredicted RBP14.68□□□□□ -0.06
CUX1-213ENST00000549414 RRNAD1Q96FB5 475 aaKnown RBP14.68□□□□□ -0.06
CUX1-213ENST00000549414 TSPAN32Q96QS1 320 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 EXOGQ9Y2C4 368 aaKnown RBP14.68□□□□□ -0.06
CUX1-213ENST00000549414 SGCEO43556 437 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 FBXO24O75426 580 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 CT45A8P0DMV1 189 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 CT45A9P0DMV2 189 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 EFNA3P52797 238 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 MYBPHQ13203 477 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 CT45A2Q5DJT8 189 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 UNQ6126/PRO20091Q6UXV3 157 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 WDR88Q6ZMY6 472 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 MFRPQ9BY79 579 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 C1QBP02746 253 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 MSR1P21757 451 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 CLDN20P56880 219 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 FOXC1Q12948 553 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 IRF3Q14653 427 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 ZNF695Q8IW36 515 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 C11orf40Q8WZ69 217 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 CCDC86Q9H6F5 360 aaKnown RBP14.68□□□□□ -0.06
CUX1-213ENST00000549414 LRP12Q9Y561 859 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 PATJQ8NI35 1801 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 CTLA4P16410 223 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 PAQR8Q8TEZ7 354 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 OR8B4Q96RC9 309 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 ABHD1Q96SE0 405 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 POFUT1Q9H488 388 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 OR14J1Q9UGF5 321 aa14.68□□□□□ -0.06
CUX1-213ENST00000549414 SDCBPO00560 298 aaPredicted RBP14.67□□□□□ -0.06
CUX1-213ENST00000549414 OIP5O43482 229 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 CRYBA2P53672 197 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 ZNF85Q03923 595 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 C1orf210Q8IVY1 113 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 HINT2Q9BX68 163 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 WASF3Q9UPY6 502 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 OR52B4Q8NGK2 314 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 GDF2Q9UK05 429 aaPredicted RBP14.67□□□□□ -0.06
CUX1-213ENST00000549414 TTLL8A6PVC2 850 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 ALG1L2C9J202 215 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 SEMG1P04279 462 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 ZNF684Q5T5D7 378 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 OR4D9Q8NGE8 314 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 ARL5BQ96KC2 179 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 MRGPRX4Q96LA9 322 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 R4GMQ9 66 aa14.67□□□□□ -0.06
CUX1-213ENST00000549414 A0A096LPE4 126 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 A0A0B4J2A0 478 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 A0A1W2PPZ6 126 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 TRAPPC2LH3BP13 241 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 SSX5O60225 188 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 LPLP06858 475 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 POU3F3P20264 500 aaPredicted RBP14.66□□□□□ -0.06
CUX1-213ENST00000549414 CPT2P23786 658 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 CAMLGP49069 296 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 IL10RAQ13651 578 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 FJX1Q86VR8 437 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 SMIM4Q8WVI0 70 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 LIPHQ8WWY8 451 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 ALKBH3Q96Q83 286 aaPredicted RBP14.66□□□□□ -0.06
CUX1-213ENST00000549414 LRFN1Q9P244 771 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 SHPKQ9UHJ6 478 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 TRAV1-2A0A0B4J238 106 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 IKZF1Q13422 519 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 THEM4Q5T1C6 240 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 GABRG1Q8N1C3 465 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 SCGB1C1Q8TD33 95 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 PBOV1Q9GZY1 135 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 TRAPPC4Q9Y296 219 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 DICER1Q9UPY3 1922 aaKnown RBP14.66□□□□□ -0.06
CUX1-213ENST00000549414 SIP14410 1827 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 FAM221AA4D161 298 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 IGKV1D-16P01601 117 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 IGHEP01854 428 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 SERPINE2P07093 398 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 TRAPPC2P0DI81 140 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 TRAPPC2BP0DI82 140 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 GCH1P30793 250 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 MDGA2Q7Z553 956 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms