RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 GDF2Q9UK05 429 aaPredicted RBP16.47■□□□□ 0.23
PRPF40B-208ENST00000548436 IL5P05113 134 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 VSIG10L2P0DP72 767 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 GABRA1P14867 456 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 ZFP36L1Q07352 338 aaKnown RBP16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 RBMS2Q15434 407 aaKnown RBP16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 ZNF626Q68DY1 528 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 KLHL24Q6TFL4 600 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 ZNF627Q7L945 461 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 ADGRE4PQ86SQ3 457 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 ELMOD2Q8IZ81 293 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 CLEC1AQ8NC01 280 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 OR2T35Q8NGX2 323 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 DVL3Q92997 716 aaPredicted RBP16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 OXGR1Q96P68 337 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 GINS4Q9BRT9 223 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 ZNF700Q9H0M5 742 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 CA10Q9NS85 328 aa16.46■□□□□ 0.23
PRPF40B-208ENST00000548436 CD3DP04234 171 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 AKAIN1P0CW23 69 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 CPN1P15169 458 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 ADH6P28332 368 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 EIF1P41567 113 aaKnown RBP16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 PER3P56645 1201 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 SNTA1Q13424 505 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 MOGAT2Q3SYC2 334 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 SLC25A47Q6Q0C1 308 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 SLC36A1Q7Z2H8 476 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 OR52B4Q8NGK2 314 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 OR8S1Q8NH09 359 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 OR6X1Q8NH79 312 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 SEH1LQ96EE3 360 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 MGAT4CQ9UBM8 478 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 HS3ST3B1Q9Y662 390 aa16.46■□□□□ 0.22
PRPF40B-208ENST00000548436 NCOA6Q14686 2063 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 LAMTOR5O43504 91 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 CREBL2O60519 120 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 TOXO94900 526 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 ZNF239Q16600 458 aaKnown RBP16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 ZNF813Q6ZN06 617 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 SPICQ8N5J4 248 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 MEIOBQ8N635 442 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 OR8H1Q8NGG4 311 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 OR51S1Q8NGJ8 323 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 SLC25A43Q8WUT9 341 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 ADAT3Q96EY9 351 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 CHIAQ9BZP6 476 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 HEXA-AS1Q9H8Q6 139 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 PIPOXQ9P0Z9 390 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 ELF5Q9UKW6 265 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 HDGFL3Q9Y3E1 203 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 SDK2Q58EX2 2172 aa16.45■□□□□ 0.22
PRPF40B-208ENST00000548436 AQP7P3A6NL99 342 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 SULT2B1O00204 365 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 TPOP07202 933 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 CCL3P10147 92 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 ZNF43P17038 809 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 CLPPQ16740 277 aaPredicted RBP16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 NKAIN3Q8N8D7 197 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 OR1J2Q8NGS2 313 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 ZBTB8AQ96BR9 441 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 CNTD2Q9H8S5 307 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 PROK2Q9HC23 129 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 GPN1Q9HCN4 374 aaPredicted RBP16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 SNRPGP15A8MWD9 76 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 MASP2O00187 686 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 SYT7O43581 403 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 CLDN6P56747 220 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 MC2RQ01718 297 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 SSBP1Q04837 148 aaKnown RBP16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 TRA2AQ13595 282 aaKnown RBP eCLIP16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 HIST3H3Q16695 136 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 TRIM61Q5EBN2 209 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 ZBTB37Q5TC79 503 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 STEAP1BQ6NZ63 245 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 OR52N4Q8NGI2 321 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 OR6N1Q8NGY5 312 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 SORCS2Q96PQ0 1159 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 ZMAT3Q9HA38 289 aaKnown RBP16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 EIF3KQ9UBQ5 218 aaKnown RBP16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 POLR1DQ9Y2S0 133 aa16.44■□□□□ 0.22
PRPF40B-208ENST00000548436 LPLP06858 475 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 QDPRP09417 244 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 BDKRB2P30411 391 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 SSTR2P30874 369 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 GNALP38405 381 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 PMPCAQ10713 525 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 EXT1Q16394 746 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 OPN5Q6U736 354 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 TEX261Q6UWH6 196 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 TMPPEQ6ZT21 453 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 GABRG1Q8N1C3 465 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 OR2AJ1Q8NGZ0 328 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 WDR89Q96FK6 387 aaPredicted RBP16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 GNRHR2Q96P88 292 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 CDCP1Q9H5V8 836 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 U3KQ87 197 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 KIAA1549Q9HCM3 1950 aa16.43■□□□□ 0.22
PRPF40B-208ENST00000548436 A0A1B0GTI1 187 aa16.42■□□□□ 0.22
PRPF40B-208ENST00000548436 C9J4A7 227 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms