RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 HS3ST5Q8IZT8 346 aa10.14□□□□□ -0.79
YBX3-217ENST00000546164 PROKR2Q8NFJ6 384 aa10.14□□□□□ -0.79
YBX3-217ENST00000546164 ZNF556Q9HAH1 456 aa10.14□□□□□ -0.79
YBX3-217ENST00000546164 CYSLTR2Q9NS75 346 aa10.14□□□□□ -0.79
YBX3-217ENST00000546164 H3BN98 237 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 TLX2O43763 284 aaPredicted RBP10.13□□□□□ -0.79
YBX3-217ENST00000546164 CD5LO43866 347 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 TIPRLO75663 272 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 NCR1O76036 304 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 HLA-DQA2P01906 255 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 HPXP02790 462 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 SPI1P17947 270 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 PYCR1P32322 319 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 LIPAP38571 399 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 CCNIQ14094 377 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 ATP6AP1Q15904 470 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 RSPO1Q2MKA7 263 aaPredicted RBP10.13□□□□□ -0.79
YBX3-217ENST00000546164 TEX30Q5JUR7 227 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 FAM209AQ5JX71 171 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 LINC01590Q5TEZ4 76 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 FAHD1Q6P587 224 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 TMEM154Q6P9G4 183 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 CORO6Q6QEF8 472 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 CFAP77Q6ZQR2 320 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 COLCA1Q6ZS62 124 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 Q71RC1 249 aaPredicted RBP10.13□□□□□ -0.79
YBX3-217ENST00000546164 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.13□□□□□ -0.79
YBX3-217ENST00000546164 PARP8Q8N3A8 854 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 OR9Q1Q8NGQ5 310 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 OR2AJ1Q8NGZ0 328 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 ZNRF4Q8WWF5 429 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 SLC7A6Q92536 515 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 RDH5Q92781 318 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 CDADC1Q9BWV3 514 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 BPESC1Q9GZL8 116 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 CHODLQ9H9P2 273 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 PNRC2Q9NPJ4 139 aaKnown RBP10.13□□□□□ -0.79
YBX3-217ENST00000546164 GRIP1Q9Y3R0 1128 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 COMMD3-BMI1R4GMX3 469 aa10.13□□□□□ -0.79
YBX3-217ENST00000546164 IGHV4-61A0A0C4DH41 118 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 PLSCR5A0PG75 271 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 HMGN1P05114 100 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 DBHP09172 617 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 TACSTD2P09758 323 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 FCGR1AP12314 374 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ZNF823P16415 610 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ZNF23P17027 643 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 HOXB4P17483 251 aaPredicted RBP10.12□□□□□ -0.79
YBX3-217ENST00000546164 KITLGP21583 273 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ACHEP22303 614 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 PRKACGP22612 351 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 FASP25445 335 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 FMO3P31513 532 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 MAGEB1P43366 347 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ZNF81P51508 661 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 CDK5Q00535 292 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 PSG7Q13046 419 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 GINS1Q14691 196 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 CARTPTQ16568 116 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ALKBH6Q3KRA9 238 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ZMAT1Q5H9K5 638 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ACSM5Q6NUN0 579 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 LINC00346Q8IVM7 164 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 IQCF1Q8N6M8 205 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ATG16L2Q8NAA4 619 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 OR5L1Q8NGL2 311 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 OR5K1Q8NHB7 308 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 PTP4A1Q93096 173 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 APOBEC3DQ96AK3 386 aaPredicted RBP10.12□□□□□ -0.79
YBX3-217ENST00000546164 HAVCR1Q96D42 359 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 MAP6Q96JE9 813 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 DIRC2Q96SL1 478 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 PITX2Q99697 317 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 ATF6BQ99941 703 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 C1QTNF5Q9BXJ0 243 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 SLC25A19Q9HC21 320 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 DDX28Q9NUL7 540 aaKnown RBP10.12□□□□□ -0.79
YBX3-217ENST00000546164 STARD10Q9Y365 291 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 AP4S1Q9Y587 144 aa10.12□□□□□ -0.79
YBX3-217ENST00000546164 CHD3Q12873 2000 aaKnown RBP10.12□□□□□ -0.79
YBX3-217ENST00000546164 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.11□□□□□ -0.79
YBX3-217ENST00000546164 TVP23AA6NH52 213 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 ZSCAN5BA6NJL1 495 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 SURF4O15260 269 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 RP2O75695 350 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 CIB2O75838 187 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 GYPBP06028 91 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 CD55P08174 381 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 ACSM4P0C7M7 580 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 CLUP10909 449 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 RAC2P15153 192 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 OTX1P32242 354 aaPredicted RBP10.11□□□□□ -0.79
YBX3-217ENST00000546164 ENTPD1P49961 510 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 TMEM33P57088 247 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 GGTLC2Q14390 218 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 LYPD4Q6UWN0 246 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 FBXW12Q6X9E4 464 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 CCDC121Q6ZUS5 278 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 HIPK1Q86Z02 1210 aa10.11□□□□□ -0.79
YBX3-217ENST00000546164 OR51L1Q8NGJ5 315 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms