RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PABPC1L2AQ5JQF8 200 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 ARL9Q6T311 187 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 DRAM2Q6UX65 266 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 CFAP77Q6ZQR2 320 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 LHFPL3Q86UP9 236 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 WDR31Q8NA23 367 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 RORBQ92753 470 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 S100PBPQ96BU1 408 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 TUBG2Q9NRH3 451 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 BABAM2Q9NXR7 383 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 ZNF391Q9UJN7 358 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 IKZF2Q9UKS7 526 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 IGLV1-44P01699 117 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 HLA-HP01893 362 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 CD79AP11912 226 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 CRYGSP22914 178 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 CCKARP32238 428 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 CCR9P51686 369 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 TPTEP56180 551 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 TFF3Q07654 80 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 FAM27E3Q08E93 113 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 MLLT11Q13015 90 aaPredicted RBP13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 PPA1Q15181 289 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 CORO6Q6QEF8 472 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 C4orf36Q96KX1 117 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 COG8Q96MW5 612 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 TBX5Q99593 518 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 WNT5BQ9H1J7 359 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 MRM2Q9UI43 246 aaKnown RBP13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 KLHDC2Q9Y2U9 406 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 LRP12Q9Y561 859 aa13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 KLF2Q9Y5W3 355 aaPredicted RBP13.96□□□□□ -0.18
PRPF40A-212ENST00000545856 HEATR1Q9H583 2144 aaKnown RBP13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 FAM90A27PA6NNH2 459 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 ZG16O60844 167 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 GOSR1O95249 250 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 SMIM18P0DKX4 95 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 PSKH1P11801 424 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF14P17017 642 aaPredicted RBP13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 APLNRP35414 380 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 RPS27P42677 84 aaKnown RBP13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 HTR5AP47898 357 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 CDH15P55291 814 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 DBPQ10586 325 aaPredicted RBP13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 TBC1D28Q2M2D7 210 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 SYT6Q5T7P8 510 aaPredicted RBP13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 LIPNQ5VXI9 398 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 RPL22L1Q6P5R6 122 aaKnown RBP13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 KCTD8Q6ZWB6 473 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 SSX6Q7RTT6 188 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 MDP1Q86V88 176 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 YIPF7Q8N8F6 280 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 CCDC54Q8NEL0 328 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 OR52H1Q8NGJ2 320 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 OR10S1Q8NGN2 331 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 SGCDQ92629 289 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 THRSPQ92748 146 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF75AQ96N20 296 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 DOK1Q99704 481 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 ELOVL3Q9HB03 270 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 CENPMQ9NSP4 180 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 SLCO1C1Q9NYB5 712 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 CLEC2DQ9UHP7 191 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 GNG8Q9UK08 70 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 R4GMQ9 66 aa13.95□□□□□ -0.18
PRPF40A-212ENST00000545856 HELZ2Q9BYK8 2649 aaKnown RBP13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 M0R135 149 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 GPRIN2O60269 458 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 PSMA1P25786 263 aaKnown RBP13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 STOMP27105 288 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 PCSK6P29122 969 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 GDI2P50395 445 aaKnown RBP13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 MED22Q15528 200 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 TRAM1Q15629 374 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 TAB1Q15750 504 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 XAF1Q6GPH4 301 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF774Q6NX45 483 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 SEZ6L2Q6UXD5 910 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 LRRN1Q6UXK5 716 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 RPS4Y2Q8TD47 263 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 SPRYD4Q8WW59 207 aaPredicted RBP13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 PELI1Q96FA3 418 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF799Q96GE5 643 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 DACH2Q96NX9 599 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 AMELYQ99218 206 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 RGCCQ9H4X1 137 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 OPA3Q9H6K4 179 aa13.94□□□□□ -0.18
PRPF40A-212ENST00000545856 RTTNQ86VV8 2226 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 J3QLW9 94 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 ADRA2AP08913 450 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 ATP6V1B1P15313 513 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF19P17023 458 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 PTAFRP25105 342 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 RPL5P46777 297 aaKnown RBP13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 HCCSP53701 268 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 OR12D2P58182 307 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 PIGFQ07326 219 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 TPBGQ13641 420 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 RFLNBQ8N5W9 214 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms