RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, human

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC4-216	ENST00000544989	CCL8	P80075	99 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	ALKBH6	Q3KRA9	238 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	CHRFAM7A	Q494W8	412 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	CCDC92	Q53HC0	331 aa	Predicted RBP	10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	SPATA46	Q5T0L3	261 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	SLC35F1	Q5T1Q4	408 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	SPATA24	Q86W54	205 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	HIPK1	Q86Z02	1210 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	DNAJC9	Q8WXX5	260 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	TIMD4	Q96H15	378 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	TSSK2	Q96PF2	358 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	MDFI	Q99750	246 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	LHFPL6	Q9Y693	200 aa		10.08	□□□□□ -0.8
HDAC4-216	ENST00000544989	CHD3	Q12873	2000 aa	Known RBP	10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	IGHV1-69-2	A0A0G2JMI3	117 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	LOC100289279	A0A1B0GTE1	492 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	TCRBV3S1	A0A5B6	114 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	DCTN6	O00399	190 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	SURF4	O15260	269 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	PPIH	O43447	177 aa	Known RBP	10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	LMX1B	O60663	402 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	LILRA1	O75019	489 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	NGF	P01138	241 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	CD55	P08174	381 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	ANXA8	P13928	327 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	SELE	P16581	610 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	PAICS	P22234	425 aa	Known RBP	10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	FMO3	P31513	532 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	MPV17	P39210	176 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	BNIP1	Q12981	228 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	HFE	Q30201	348 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	FBXW12	Q6X9E4	464 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	LINC01356	Q8N9X3	169 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	HAVCR1	Q96D42	359 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	NRBF2	Q96F24	287 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	FEV	Q99581	238 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	PITX2	Q99697	317 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	ATF6B	Q99941	703 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	PLA2G12A	Q9BZM1	189 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	ZNF275	Q9NSD4	429 aa	Predicted RBP	10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	DNAJB9	Q9UBS3	223 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	CYB5R1	Q9UHQ9	305 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	POMP	Q9Y244	141 aa		10.07	□□□□□ -0.8
HDAC4-216	ENST00000544989	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	10.06	□□□□□ -0.8	8e-7	■■■□□ 15.3
HDAC4-216	ENST00000544989	CLDN25	C9JDP6	229 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989		H3BN98	237 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	IFNL4	K9M1U5	179 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	GSC2	O15499	205 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	FKBP6	O75344	327 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	DEAF1	O75398	565 aa	Predicted RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	RP2	O75695	350 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	NCR1	O76036	304 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	IGHV1-46	P01743	117 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	HMGN1	P05114	100 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	ANPEP	P15144	967 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	ZNF16	P17020	682 aa	Predicted RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	TNFRSF1A	P19438	455 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	COL8A2	P25067	703 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	GRK5	P34947	590 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	MAGEB1	P43366	347 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	TPTE	P56180	551 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	CBX1	P83916	185 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	MALL	Q13021	153 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	PSG7	Q13046	419 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	MEP1B	Q16820	701 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	SLC18B1	Q6NT16	456 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	SLC27A4	Q6P1M0	643 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	PEG10	Q86TG7	708 aa	Known RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	PRIMA1	Q86XR5	153 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	SLC37A3	Q8NCC5	494 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	PAPD5	Q8NDF8	572 aa	Known RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	OR8D4	Q8NGM9	314 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	RAB1C	Q92928	201 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	SPTSSA	Q969W0	71 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	MSI2	Q96DH6	328 aa	Known RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	C1orf159	Q96HA4	380 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	DDO	Q99489	341 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	RBM4	Q9BWF3	364 aa	Known RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	BEX2	Q9BXY8	128 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	SHARPIN	Q9H0F6	387 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	CMC2	Q9NRP2	79 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	VNN3	Q9NY84	501 aa		10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	PDP1	Q9P0J1	537 aa	Predicted RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	PURG	Q9UJV8	347 aa	Known RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	NOP16	Q9Y3C1	178 aa	Known RBP	10.06	□□□□□ -0.8
HDAC4-216	ENST00000544989	CUBN	O60494	3623 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	YLPM1	P49750	1951 aa	Known RBP	10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989		B4DSR2	109 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	LYNX1	G3V0Z9	82 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	SPRY3	O43610	288 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	SOX14	O95416	240 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	TGFA	P01135	160 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	LYNX1	P0DP58	116 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	GGT2	P36268	569 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	PPP1R8	Q12972	351 aa	Known RBP	10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	CDK5R2	Q13319	367 aa		10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	TST	Q16762	297 aa	Known RBP	10.05	□□□□□ -0.8
HDAC4-216	ENST00000544989	KRTAP27-1	Q3LI81	207 aa		10.05	□□□□□ -0.8

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