RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NXPE3Q969Y0 559 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 SEMA6CQ9H3T2 930 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 RTTNQ86VV8 2226 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 SERTM1A2A2V5 107 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 CDC14CA4D256 554 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 BTBD17A6NE02 478 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 AP4M1O00189 453 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 CTAG2O75638 210 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 ITGB2P05107 769 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 GNB3P16520 340 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 GABRR1P24046 479 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 RABIFP47224 123 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 SELENOVP59797 346 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 OR2T2Q6IF00 324 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM182Q6ZP80 229 aaPredicted RBP12.92□□□□□ -0.34
LIMS1-215ENST00000544547 OR5M8Q8NGP6 311 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 MITD1Q8WV92 249 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 RHOVQ96L33 236 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 NIPSNAP3BQ9BS92 247 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 GSN-AS1Q9NRJ2 163 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 RLFQ13129 1914 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 CABIN1Q9Y6J0 2220 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 CTDSPLO15194 276 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 HSD11B2P80365 405 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF239Q16600 458 aaKnown RBP12.92□□□□□ -0.34
LIMS1-215ENST00000544547 AWAT1Q58HT5 328 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 PRAMEF8Q5VWM4 474 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 PRAMEF7Q5VXH5 474 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 SUMF1Q8NBK3 374 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 ADOQ96SZ5 270 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 JAM3Q9BX67 310 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 GDE1Q9NZC3 331 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 KCNG2Q9UJ96 466 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 AMDHD2Q9Y303 409 aa12.92□□□□□ -0.34
LIMS1-215ENST00000544547 LCTP09848 1927 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 ATG2BQ96BY7 2078 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF587BE7ETH6 402 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 RPL12P30050 165 aaKnown RBP12.91□□□□□ -0.34
LIMS1-215ENST00000544547 P2RY2P41231 377 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 TM4SF4P48230 202 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 TGIF1Q15583 401 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 FIP1L1Q6UN15 594 aaKnown RBP12.91□□□□□ -0.34
LIMS1-215ENST00000544547 ZNF383Q8NA42 475 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 OR1J1Q8NGS3 322 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 GDF15Q99988 308 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 SLC7A11Q9UPY5 501 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 RNF215Q9Y6U7 377 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 ALOX12BO75342 701 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 ADAP1O75689 374 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 RAD51DO75771 328 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 GPANK1O95872 356 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 IFNA5P01569 189 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM225BP0DP42 221 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 MPPED2Q15777 294 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 C2orf68Q2NKX9 166 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 OR2B11Q5JQS5 317 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM244Q5VVB8 128 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 FBXW12Q6X9E4 464 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 IL34Q6ZMJ4 242 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 Q6ZSR6 202 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 BEND4Q6ZU67 534 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 ANGPTL5Q86XS5 388 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM217Q8N7C4 229 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 OR5D14Q8NGL3 314 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 PAPOLGQ9BWT3 736 aaKnown RBP12.91□□□□□ -0.34
LIMS1-215ENST00000544547 PBX4Q9BYU1 374 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 PLEKHJ1Q9NW61 149 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 SLC22A7Q9Y694 548 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 MGAMO43451 1857 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 A0A0U1RQK1 487 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 DUSP8Q13202 625 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 CDKN3Q16667 212 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 MIDNQ504T8 468 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM184AQ6ZMB5 413 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 GVQW1Q8N7I0 195 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 PHYHIPLQ96FC7 376 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 DCBLD2Q96PD2 775 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 GAB2Q9UQC2 676 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 ENTPD2Q9Y5L3 495 aa12.91□□□□□ -0.34
LIMS1-215ENST00000544547 ADAM10O14672 748 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 OPN1LWP04000 364 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 SKP2Q13309 424 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 RPL7L1Q6DKI1 246 aaKnown RBP12.9□□□□□ -0.34
LIMS1-215ENST00000544547 MAP3K3Q99759 626 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 C7orf77A4D0Y5 90 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 HOXB3P14651 431 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-215ENST00000544547 EFNB2P52799 333 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 ARHGAP11BQ3KRB8 267 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 RPUSD3Q6P087 351 aaKnown RBP12.9□□□□□ -0.34
LIMS1-215ENST00000544547 OR10AC1Q8NH08 325 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 RLN3Q8WXF3 142 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 HHIPQ96QV1 700 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 EDEM2Q9BV94 578 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 RAB33BQ9H082 229 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 MOKQ9UQ07 419 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 DICER1Q9UPY3 1922 aaKnown RBP12.9□□□□□ -0.34
LIMS1-215ENST00000544547 A0A1W2PPE2 198 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 PRRT4C9JH25 899 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 NPIPB8E9PQR5 432 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 XRCC2O43543 280 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms