RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PTCHD4Q6ZW05 846 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 ATG16L2Q8NAA4 619 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 FNDC8Q8TC99 324 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 WFDC12Q8WWY7 111 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 ZNF570Q96NI8 536 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 SYT4Q9H2B2 425 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 RERGLQ9H628 205 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 MARCH7Q9H992 704 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 CMTM6Q9NX76 183 aa12.9□□□□□ -0.34
CLSTN3-213ENST00000541953 FAM181BA6NEQ2 426 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 DCTN6O00399 190 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 HLA-DPB1P04440 258 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 RPL4P36578 427 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 GUCA1AP43080 201 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 AQP6Q13520 282 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 KRR1Q13601 381 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 ZNF404Q494X3 552 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 ARL9Q6T311 187 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 MUC20Q8N307 709 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 FITM2Q8N6M3 262 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 KIR3DL3Q8N743 410 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 OR2T12Q8NG77 320 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 OR10S1Q8NGN2 331 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 OR1F12Q8NHA8 337 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 RAB40AQ8WXH6 277 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 ACOT11Q8WXI4 607 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 PTP4A1Q93096 173 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 FAM46AQ96IP4 442 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 TSSK2Q96PF2 358 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 SLITRK2Q9H156 845 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 GRHPRQ9UBQ7 328 aa12.89□□□□□ -0.35
CLSTN3-213ENST00000541953 LOC100653049A0A140TA62 436 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 POM121CA8CG34 1229 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 SLC16A7O60669 478 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 KRT34O76011 436 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 SFTPBP07988 381 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 PPIAL4GP0DN37 164 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 RAC2P15153 192 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 FGF12P61328 243 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 GNB2P62879 340 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 TRAM2Q15035 370 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 COQ5Q5HYK3 327 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 SLC27A4Q6P1M0 643 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 C16orf87Q6PH81 154 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 CORO6Q6QEF8 472 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 FBXW12Q6X9E4 464 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 ZNF730Q6ZMV8 503 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 ZNF841Q6ZN19 808 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 MBOAT2Q6ZWT7 520 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 RHOUQ7L0Q8 258 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 FAM156AQ8NDB6 213 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 OR8G5Q8NG78 346 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 SH3GL1Q99961 368 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 SLC30A2Q9BRI3 323 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 FNDC11Q9BVV2 318 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 SAR1AQ9NR31 198 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 LHFPL6Q9Y693 200 aa12.88□□□□□ -0.35
CLSTN3-213ENST00000541953 KIR2DS1A0A191URI9 304 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 ELOVL7A1L3X0 281 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 SOCS2O14508 198 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 SURF4O15260 269 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 FCN3O75636 299 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 IFNA14P01570 189 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 VIMP08670 466 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 PITPNBP48739 271 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 MAB21L1Q13394 359 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 ZBED5Q49AG3 693 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 PRAMEF6Q5VXH4 476 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 METTL21CQ5VZV1 264 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 LRRN1Q6UXK5 716 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 TMPRSS11FQ6ZWK6 438 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 SLC7A13Q8TCU3 470 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 NEIL1Q96FI4 390 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 NUDT16L1Q9BRJ7 211 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 CHIAQ9BZP6 476 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 NUAK2Q9H093 628 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 VSX1Q9NZR4 365 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 CTSZQ9UBR2 303 aa12.87□□□□□ -0.35
CLSTN3-213ENST00000541953 A0A1B0GWJ7 208 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 SRRM5B3KS81 715 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 XKRYO14609 159 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 PTP4A3O75365 173 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 ZNF682O95780 498 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 IFNW1P05000 195 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 TUBG1P23258 451 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 CDKN2AP42771 156 aaKnown RBP12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 MTNR1AP48039 350 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 HIST1H3AP68431 136 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 MPPED2Q15777 294 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 CLEC12AQ5QGZ9 265 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 HIST2H3PS2Q5TEC6 136 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 WDR25Q64LD2 544 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 FIP1L1Q6UN15 594 aaKnown RBP12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 BTNL3Q6UXE8 466 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 HIST2H3AQ71DI3 136 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 NAA40Q86UY6 237 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 GLB1L2Q8IW92 636 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 PCYOX1LQ8NBM8 494 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 OR13G1Q8NGZ3 307 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms