RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 OR52A1Q9UKL2 312 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 ATXN7L1Q9ULK2 861 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 KCNK7Q9Y2U2 307 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 TICRRQ7Z2Z1 1910 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 XIRP2A4UGR9 3374 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CNTRLQ7Z7A1 2325 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 FOXS1O43638 330 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CD74P04233 296 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CRYBA1P05813 215 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CRHP06850 196 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF806P0C7X5 589 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 GP1BBP13224 206 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 PI3P19957 117 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 FCARP24071 287 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 RFC3P40938 356 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 GLO1Q04760 184 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 RBM39Q14498 530 aaKnown RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 PRSS58Q8IYP2 241 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CRB3Q9BUF7 120 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 RPP25Q9BUL9 199 aaKnown RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 EDEM2Q9BV94 578 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 TBL1XR1Q9BZK7 514 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 FANCFQ9NPI8 374 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 ZFP57Q9NU63 452 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 ICOSLGO75144 302 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 TNFP01375 233 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 S100A10P60903 97 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 INSM1Q01101 510 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-237ENST00000539504 HLA-DQA1Q5Y7H0 255 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 TMPPEQ6ZT21 453 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 COX15Q7KZN9 410 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 DCXRQ7Z4W1 244 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 TMEM200AQ86VY9 491 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 CATSPERDQ86XM0 798 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 LILRB1Q8NHL6 650 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-237ENST00000539504 ROBO4Q8WZ75 1007 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 METTL8Q9H825 291 aaKnown RBP10.09□□□□□ -0.79
SYNE1-237ENST00000539504 MYOZ1Q9NP98 299 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-237ENST00000539504 TRAV36DV7A0A075B6V5 113 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 PRSS44E7EML9 344 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 APOC1P02654 83 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 GLAP06280 429 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 ARRB1P49407 418 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-237ENST00000539504 TOMM20Q15388 145 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 C19orf47Q8N9M1 422 aaKnown RBP10.09□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF248Q8NDW4 579 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 OR52N5Q8NH56 324 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 LIPHQ8WWY8 451 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 TMEM41AQ96HV5 264 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 SPACA5Q96QH8 159 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 OR11A1Q9GZK7 315 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 CNTD2Q9H8S5 307 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 RAB22AQ9UL26 194 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 K7EQS6 105 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 IFI6P09912 130 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 H2BFMP0C1H6 154 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 KIR2DL1P43626 348 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-237ENST00000539504 MEOX2P50222 304 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 NPY4RP50391 375 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF117Q03924 483 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 FUT7Q11130 342 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF615Q8N8J6 731 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 OR4K15Q8NH41 348 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 UQCC1Q9NVA1 299 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 CTSFQ9UBX1 484 aa10.09□□□□□ -0.79
SYNE1-237ENST00000539504 S100A6P06703 90 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 GUSBP08236 651 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 CBR1P16152 277 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 AKT2P31751 481 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 PPICP45877 212 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 TEX30Q5JUR7 227 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 FDX2Q6P4F2 183 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 ZDHHC22Q8N966 263 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 OR13H1Q8NG92 308 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 OR13C9Q8NGT0 318 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 BADQ92934 168 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 A0A0A6YYH2 397 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 A6NJ64 397 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 ADAP1O75689 374 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 S100A9P06702 114 aaKnown RBP10.08□□□□□ -0.8
SYNE1-237ENST00000539504 PNLIPRP2P54317 469 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 GPR85P60893 370 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 PEA15Q15121 130 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 SGCAQ16586 387 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 C1orf53Q5VUE5 145 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 AWAT2Q6E213 333 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 ZNF704Q6ZNC4 412 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-237ENST00000539504 RXFP4Q8TDU9 374 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 S1PR5Q9H228 398 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 R4GMQ9 66 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 RAB27BO00194 218 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 EFSO43281 561 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 BGLAPP02818 100 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 NME2P22392 152 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 NR0B1P51843 470 aaKnown RBP10.08□□□□□ -0.8
SYNE1-237ENST00000539504 ZNF260Q3ZCT1 412 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 PARM1Q6UWI2 310 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 OR52N4Q8NGI2 321 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 MAP3K3Q99759 626 aa10.08□□□□□ -0.8
SYNE1-237ENST00000539504 KLF2Q9Y5W3 355 aaPredicted RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms