RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TMEM246Q9BRR3 403 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 GRHPRQ9UBQ7 328 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 ADAM18Q9Y3Q7 739 aa11.34□□□□□ -0.59
SS18-204ENST00000539244 A0A087WUU8 490 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 MDFIC2A0A1B0GVS7 189 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 SRRM5B3KS81 715 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 CDC42EP2O14613 210 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 MRASO14807 208 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 CYB5R3P00387 301 aaPredicted RBP11.33□□□□□ -0.6
SS18-204ENST00000539244 ZNF26P17031 533 aaPredicted RBP11.33□□□□□ -0.6
SS18-204ENST00000539244 GATA4P43694 442 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 HLXQ14774 488 aaPredicted RBP11.33□□□□□ -0.6
SS18-204ENST00000539244 ZBED5Q49AG3 693 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 MIDNQ504T8 468 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 OR2T2Q6IF00 324 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 MBOAT2Q6ZWT7 520 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 SPATC1Q76KD6 591 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 JAZF1Q86VZ6 243 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 GLB1L2Q8IW92 636 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 C1orf87Q8N0U7 546 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 OR5AS1Q8N127 324 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 FITM2Q8N6M3 262 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 OR2T12Q8NG77 320 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 OR10AD1Q8NGE0 317 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 WFDC12Q8WWY7 111 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 LZICQ8WZA0 190 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 APOBEC3DQ96AK3 386 aaPredicted RBP11.33□□□□□ -0.6
SS18-204ENST00000539244 ZNF582Q96NG8 517 aaPredicted RBP11.33□□□□□ -0.6
SS18-204ENST00000539244 ZNF570Q96NI8 536 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 FNDC11Q9BVV2 318 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 ASH2LQ9UBL3 628 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 SNX13Q9Y5W8 968 aa11.33□□□□□ -0.6
SS18-204ENST00000539244 VWFP04275 2813 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 ELOVL7A1L3X0 281 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 IQCF6A8MYZ5 107 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 J3KTA2 159 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 PHYHO14832 338 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 MLNRO43193 412 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 HOXA3O43365 443 aaPredicted RBP11.32□□□□□ -0.6
SS18-204ENST00000539244 KHDRBS3O75525 346 aaKnown RBP11.32□□□□□ -0.6
SS18-204ENST00000539244 ZNF205O95201 554 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 IFNW1P05000 195 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 DBHP09172 617 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 RPL4P36578 427 aaKnown RBP11.32□□□□□ -0.6
SS18-204ENST00000539244 YAP1P46937 504 aaKnown RBP11.32□□□□□ -0.6
SS18-204ENST00000539244 PITPNBP48739 271 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 HIST1H3AP68431 136 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 KCNMB1Q16558 191 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 DEFB112Q30KQ8 113 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 HIST2H3PS2Q5TEC6 136 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 GPR139Q6DWJ6 353 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 C1orf94Q6P1W5 598 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 ZNF730Q6ZMV8 503 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 HIST2H3AQ71DI3 136 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 NLRC3Q7RTR2 1065 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 VTCN1Q7Z7D3 282 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 TMEM86BQ8N661 226 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 OR8B3Q8NGG8 313 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 OR10S1Q8NGN2 331 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 OR8B2Q96RD0 313 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 GPX7Q96SL4 187 aaPredicted RBP11.32□□□□□ -0.6
SS18-204ENST00000539244 NUDT16L1Q9BRJ7 211 aaKnown RBP11.32□□□□□ -0.6
SS18-204ENST00000539244 SYT4Q9H2B2 425 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 NMNAT1Q9HAN9 279 aaPredicted RBP11.32□□□□□ -0.6
SS18-204ENST00000539244 NOX4Q9NPH5 578 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 PTTG3PQ9NZH4 202 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 VSX1Q9NZR4 365 aaPredicted RBP11.32□□□□□ -0.6
SS18-204ENST00000539244 RHCGQ9UBD6 479 aa11.32□□□□□ -0.6
SS18-204ENST00000539244 A0A0G2JK05 382 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 FAM181BA6NEQ2 426 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 LRRC30A6NM36 301 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 HMGB1P1B2RPK0 211 aaPredicted RBP11.31□□□□□ -0.6
SS18-204ENST00000539244 H0YL77 283 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 RER1O15258 196 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 SLC16A7O60669 478 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 NDUFA7O95182 113 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 KNG1P01042 644 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 OMGP23515 440 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 SDHAP31040 664 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 PSMB10P40306 273 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 PMELP40967 661 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 GPR4P46093 362 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 KLF10Q13118 480 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 KRR1Q13601 381 aaKnown RBP11.31□□□□□ -0.6
SS18-204ENST00000539244 MAPRE2Q15555 327 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 WDR25Q64LD2 544 aaPredicted RBP11.31□□□□□ -0.6
SS18-204ENST00000539244 TBPL2Q6SJ96 375 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 Q6YL49 198 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 ZNF841Q6ZN19 808 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 DCDC5Q6ZRR9 648 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 COLCA1Q6ZS62 124 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 ADCK1Q86TW2 530 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 MOGAT3Q86VF5 341 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 CELF2-AS1Q8N7Q2 184 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 OR4F5Q8NH21 305 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 Q8TCH9 128 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 ERGIC1Q969X5 290 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 COQ7Q99807 217 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 CITED1Q99966 193 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 TMEM120AQ9BXJ8 343 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms