RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 C12orf54Q6X4T0 127 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 MBOAT2Q6ZWT7 520 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 UBALD2Q8IYN6 164 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 LGI3Q8N145 548 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 STPG2Q8N412 459 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 ZNF561Q8N587 486 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 COX18Q8N8Q8 333 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 NOXO1Q8NFA2 376 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 OR11H7Q8NGC8 314 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 OR52K2Q8NGK3 314 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 OR9G4Q8NGQ1 327 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 OR5K2Q8NHB8 316 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 UBALD1Q8TB05 177 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 C8orf44Q96CB5 159 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 L3HYPDHQ96EM0 354 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 OR10C1Q96KK4 312 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 JSRP1Q96MG2 331 aaPredicted RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 SPIN2AQ99865 258 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 SPIN2BQ9BPZ2 258 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 CALN1Q9BXU9 219 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 RACGAP1Q9H0H5 632 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 PIGUQ9H490 435 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 RPP21Q9H633 154 aaKnown RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 GEMIN7Q9H840 131 aaKnown RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 BEX1Q9HBH7 125 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 TMEM165Q9HC07 324 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 ZNF355PQ9NSJ1 428 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 NECAP2Q9NVZ3 263 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 DUX4Q9UBX2 424 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 VANGL2Q9ULK5 521 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 ST3GAL6Q9Y274 331 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 YTHDF2Q9Y5A9 579 aaKnown RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 NACAE9PAV3 2078 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 KBTBD11-OT1A0A1B0GTJ5 212 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 LRRIQ4A6NIV6 560 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 OR2AG2A6NM03 316 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 SMKR1H3BMG3 65 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 SCAMP2O15127 329 aaKnown RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 EIF1BO60739 113 aaKnown RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 TSPAN13O95857 204 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 HBE1P02100 147 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 SERPINE2P07093 398 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 CD37P11049 281 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 IGFBP3P17936 291 aaPredicted RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 GPX4P36969 197 aaPredicted RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 EIF1P41567 113 aaKnown RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 RBM34P42696 430 aaKnown RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 RAB9AP51151 201 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 SELENBP1Q13228 472 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 EIF4EBP1Q13541 118 aaPredicted RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 LINC00483Q53H64 154 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 C5orf47Q569G3 176 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 TMEM53Q6P2H8 277 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 OTUD6AQ7L8S5 288 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 BHLHA15Q7RTS1 189 aaPredicted RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 NKAIN4Q8IVV8 208 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 CDKL3Q8IVW4 592 aaPredicted RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 LYPD1Q8N2G4 141 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 BPIFCQ8NFQ6 507 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 OR52E2Q8NGJ4 325 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 LILRB4Q8NHJ6 448 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 NUBPLQ8TB37 319 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 PIFOQ8TCI5 191 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 RERGQ96A58 199 aaPredicted RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 WFIKKN1Q96NZ8 548 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 PANX1Q96RD7 426 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 SULT4A1Q9BR01 284 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 RSG1Q9BU20 258 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 C1orf198Q9H425 327 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 ZNF430Q9H8G1 570 aaPredicted RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 ANKRA2Q9H9E1 313 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 RETNQ9HD89 108 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 MED4Q9NPJ6 270 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 AGPAT4Q9NRZ5 378 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 MCUBQ9NWR8 336 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 SLC39A1Q9NY26 324 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 MTCH1Q9NZJ7 389 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 ADA2Q9NZK5 511 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 CLN8Q9UBY8 286 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 ZNF282Q9UDV7 671 aaPredicted RBP1.66□□□□□ -2.14
CD44-238ENST00000534296 PSG8Q9UQ74 426 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 SLC17A4Q9Y2C5 497 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 HES2Q9Y543 173 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 ARID1AO14497 2285 aa1.66□□□□□ -2.14
CD44-238ENST00000534296 DENND4AQ7Z401 1863 aa1.65□□□□□ -2.14
CD44-238ENST00000534296 TMEM120BA0PK00 339 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 TSPAN11A1L157 253 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 NVLO15381 856 aaKnown RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 CACNG3O60359 315 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 OR2F2O95006 317 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 HPRT1P00492 218 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 HLA-HP01893 362 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 APCSP02743 223 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 KRT16P08779 473 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 POLR2MP0CAP2 368 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 HSPD1P10809 573 aaKnown RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 TNFSF9P41273 254 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 RND2P52198 227 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 ZNF138P52744 262 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 SYNJ2BPP57105 145 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms