RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SLC6A9P48067 706 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 SRP9P49458 86 aaKnown RBP12.42□□□□□ -0.42
VPS28-215ENST00000531924 HLXQ14774 488 aaPredicted RBP12.42□□□□□ -0.42
VPS28-215ENST00000531924 ZMYND11Q15326 602 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 GLYATQ6IB77 296 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 OR2T2Q6IF00 324 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 SMARCD3Q6STE5 483 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 Q6ZR03 302 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 JAZF1Q86VZ6 243 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 APOBEC3DQ96AK3 386 aaPredicted RBP12.42□□□□□ -0.42
VPS28-215ENST00000531924 ERMAPQ96PL5 475 aaPredicted RBP12.42□□□□□ -0.42
VPS28-215ENST00000531924 GPX7Q96SL4 187 aaPredicted RBP12.42□□□□□ -0.42
VPS28-215ENST00000531924 GPA33Q99795 319 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 CDADC1Q9BWV3 514 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 HCAR1Q9BXC0 346 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 HDHD2Q9H0R4 259 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 SPAG4Q9NPE6 437 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 MMP26Q9NRE1 261 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 NDUFAF4Q9P032 175 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 ATPIF1Q9UII2 106 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 NUP50Q9UKX7 468 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 PPIAL4AQ9Y536 164 aa12.42□□□□□ -0.42
VPS28-215ENST00000531924 TRBV4-1A0A0J9YWV2 114 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 LRRC30A6NM36 301 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 PPP1R3DO95685 299 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 DBHP09172 617 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 NOS3P29474 1203 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 SLC6A6P31641 620 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 OMPP47874 163 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 ZNF154Q13106 437 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 HNRNPA0Q13151 305 aaKnown RBP12.41□□□□□ -0.42
VPS28-215ENST00000531924 CCDC92Q53HC0 331 aaPredicted RBP12.41□□□□□ -0.42
VPS28-215ENST00000531924 C8orf82Q6P1X6 216 aaPredicted RBP12.41□□□□□ -0.42
VPS28-215ENST00000531924 SIGLECL1Q8N7X8 197 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 OR8G5Q8NG78 346 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 OR10AD1Q8NGE0 317 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 SGMS2Q8NHU3 365 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 FANK1Q8TC84 345 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 MCUR1Q96AQ8 359 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 SRA1Q9HD15 236 aaKnown RBP12.41□□□□□ -0.42
VPS28-215ENST00000531924 GCM1Q9NP62 436 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 V9GYQ6 96 aa12.41□□□□□ -0.42
VPS28-215ENST00000531924 TENM1Q9UKZ4 2725 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 TRAPPC2LH3BP13 241 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 TMEM178BH3BS89 294 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 IMPA2O14732 288 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 SPRY1O43609 319 aaPredicted RBP12.4□□□□□ -0.42
VPS28-215ENST00000531924 DIRAS1O95057 198 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 HLA-DQA2P01906 255 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 IRF2P14316 349 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 RPS2P15880 293 aaKnown RBP12.4□□□□□ -0.42
VPS28-215ENST00000531924 SELEP16581 610 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 IFNGR2P38484 337 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 CDKN2AP42771 156 aaKnown RBP12.4□□□□□ -0.42
VPS28-215ENST00000531924 ERFP50548 548 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 MMP16P51512 607 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 UBA52P62987 128 aaKnown RBP12.4□□□□□ -0.42
VPS28-215ENST00000531924 MALLQ13021 153 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 SEC23BQ15437 767 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 KCNMB1Q16558 191 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 SLC36A3Q495N2 470 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 LEG1Q6P5S2 330 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 BTNL3Q6UXE8 466 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 FBXW12Q6X9E4 464 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 PTCHD4Q6ZW05 846 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 RNF148Q8N7C7 305 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 ZDHHC22Q8N966 263 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 BHLHE23Q8NDY6 225 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 DEFB108BQ8NET1 73 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 OR2AJ1Q8NGZ0 328 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 PLEKHA8Q96JA3 519 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 TSSK2Q96PF2 358 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 PITX2Q99697 317 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 COQ7Q99807 217 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 IFT27Q9BW83 186 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 MS4A7Q9GZW8 240 aaPredicted RBP12.4□□□□□ -0.42
VPS28-215ENST00000531924 MED4Q9NPJ6 270 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 DCAF13Q9NV06 445 aaKnown RBP12.4□□□□□ -0.42
VPS28-215ENST00000531924 TMEM100Q9NV29 134 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 ABCD2Q9UBJ2 740 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 TMCC3Q9ULS5 477 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 LRCH1Q9Y2L9 728 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 INSIG2Q9Y5U4 225 aa12.4□□□□□ -0.42
VPS28-215ENST00000531924 GADD45GO95257 159 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 GPANK1O95872 356 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 TXNDC12O95881 172 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 FSHBP01225 129 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 ZNF12P17014 697 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 CPT2P23786 658 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 RBMXP38159 391 aaKnown RBP12.39□□□□□ -0.43
VPS28-215ENST00000531924 SEC61A1P61619 476 aaKnown RBP12.39□□□□□ -0.43
VPS28-215ENST00000531924 SPIBQ01892 262 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 ECH1Q13011 328 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 BAMBIQ13145 260 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 MEP1BQ16820 701 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 RFX4Q33E94 735 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 CORO6Q6QEF8 472 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 NLRC3Q7RTR2 1065 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 TSEN54Q7Z6J9 526 aaKnown RBP12.39□□□□□ -0.43
VPS28-215ENST00000531924 C1orf87Q8N0U7 546 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms