RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 MST1LQ2TV78 715 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 KLHL12Q53G59 568 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 RBM48Q5RL73 367 aaKnown RBP12.47□□□□□ -0.41
CPSF1-206ENST00000531480 MEDAGQ5VYS4 303 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 COLCA1Q6ZS62 124 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 SHFQ7M4L6 423 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 BCDIN3DQ7Z5W3 292 aaKnown RBP12.47□□□□□ -0.41
CPSF1-206ENST00000531480 LINC00346Q8IVM7 164 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 OR2AJ1Q8NGZ0 328 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 RHOXF1Q8NHV9 184 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 OTOSQ8NHW6 89 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 FAM81AQ8TBF8 368 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 UBE2FQ969M7 185 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 DCLRE1CQ96SD1 692 aaKnown RBP12.47□□□□□ -0.41
CPSF1-206ENST00000531480 TRAF4Q9BUZ4 470 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-206ENST00000531480 CDADC1Q9BWV3 514 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 CDH20Q9HBT6 801 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 FAIMQ9NVQ4 179 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 TBCCD1Q9NVR7 557 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 EDARQ9UNE0 448 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 TPRKBQ9Y3C4 175 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 SPEF1Q9Y4P9 236 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 ATP23Q9Y6H3 246 aa12.47□□□□□ -0.41
CPSF1-206ENST00000531480 IRGMA1A4Y4 181 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 C5orf49A4QMS7 147 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 SMPD2O60906 423 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 HTR1FP30939 366 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 HTR5AP47898 357 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 SNTB2Q13425 540 aaKnown RBP12.46□□□□□ -0.41
CPSF1-206ENST00000531480 MSMPQ1L6U9 139 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 SWI5Q1ZZU3 235 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 LCN1P1Q5VSP4 162 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 ZNF691Q5VV52 312 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 SLC16A9Q7RTY1 509 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 DPY19L4Q7Z388 723 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 DCXRQ7Z4W1 244 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-206ENST00000531480 CDH24Q86UP0 819 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 ERI1Q8IV48 349 aaKnown RBP12.46□□□□□ -0.41
CPSF1-206ENST00000531480 ENTHD1Q8IYW4 607 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 ZNF101Q8IZC7 436 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 ZNF454Q8N9F8 522 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 RNF133Q8WVZ7 376 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 OTULINQ96BN8 352 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 ZNF582Q96NG8 517 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-206ENST00000531480 MYCBPQ99417 103 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-206ENST00000531480 ATF6BQ99941 703 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 BCL2L14Q9BZR8 327 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 YIPF3Q9GZM5 350 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 VCX3AQ9NNX9 186 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 CLN6Q9NWW5 311 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 H2AFY2Q9P0M6 372 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-206ENST00000531480 WARS2Q9UGM6 360 aaKnown RBP12.46□□□□□ -0.41
CPSF1-206ENST00000531480 SCOCQ9UIL1 159 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 POU2F3Q9UKI9 436 aa12.46□□□□□ -0.41
CPSF1-206ENST00000531480 OTOGQ6ZRI0 2925 aa12.46□□□□□ -0.42
CPSF1-206ENST00000531480 TMEM129A0AVI4 362 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 GPRIN2O60269 458 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 SELENOFO60613 162 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 MRPS14O60783 128 aaKnown RBP12.45□□□□□ -0.42
CPSF1-206ENST00000531480 SPARCP09486 303 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 ZNF250P15622 560 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 ALOX5APP20292 161 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 TUBG1P23258 451 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 THBS4P35443 961 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 RAD52P43351 418 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 EVX1P49640 407 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 RPS23P62266 143 aaKnown RBP12.45□□□□□ -0.42
CPSF1-206ENST00000531480 GALK2Q01415 458 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 USP51Q70EK9 711 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 MUC15Q8N387 334 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 OR6N2Q8NGY6 317 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 RFKQ969G6 155 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 PIGTQ969N2 578 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 C4orf45Q96LM5 186 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 ABHD6Q9BV23 337 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 PLK3Q9H4B4 646 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 ADGRL4Q9HBW9 690 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 TUBG2Q9NRH3 451 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 CBLN4Q9NTU7 201 aa12.45□□□□□ -0.42
CPSF1-206ENST00000531480 ZNF701Q9NV72 531 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-206ENST00000531480 CCDC168Q8NDH2 2452 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 IGLV3-9A0A075B6K5 115 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 ZNF878C9JN71 531 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 H3BSA7 217 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 NGFP01138 241 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 DBHP09172 617 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 ACSM4P0C7M7 580 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 SERPINF1P36955 418 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 OPRL1P41146 370 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 RGS6P49758 472 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 FABP6P51161 128 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 NUDT6P53370 316 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 RPS7P62081 194 aaKnown RBP12.44□□□□□ -0.42
CPSF1-206ENST00000531480 POU4F2Q12837 409 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 AGAP6Q5VW22 663 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 ARL9Q6T311 187 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 UNQ6126/PRO20091Q6UXV3 157 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 RFPL4BQ6ZWI9 263 aa12.44□□□□□ -0.42
CPSF1-206ENST00000531480 FBXL14Q8N1E6 418 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms