RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 TEX12Q9BXU0 123 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 OR2J1Q9GZK6 312 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 TAAR3PQ9P1P4 343 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 KCNG2Q9UJ96 466 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 IGLV3-9A0A075B6K5 115 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 F5H5K5 113 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 M0R233 179 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 SELENOFO60613 162 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 ICMTO60725 284 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 BAG2O95816 211 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 ALPLP05186 524 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 NAT2P11245 290 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 SLC2A5P22732 501 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 EVX1P49640 407 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 KLF3P57682 345 aaPredicted RBP11.45□□□□□ -0.58
VPS28-210ENST00000529182 RPS7P62081 194 aaKnown RBP11.45□□□□□ -0.58
VPS28-210ENST00000529182 APOFQ13790 326 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 PCK2Q16822 640 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 C12orf73Q69YU5 71 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 SPATC1Q76KD6 591 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 DPY19L4Q7Z388 723 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 TIGD4Q8IY51 512 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 PQLC1Q8N2U9 271 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 CIARTQ8N365 385 aaPredicted RBP11.45□□□□□ -0.58
VPS28-210ENST00000529182 CBR4Q8N4T8 237 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 OR6N2Q8NGY6 317 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 KLF14Q8TD94 323 aaPredicted RBP11.45□□□□□ -0.58
VPS28-210ENST00000529182 IPCEF1Q8WWN9 437 aaPredicted RBP11.45□□□□□ -0.58
VPS28-210ENST00000529182 GTF3AQ92664 365 aaKnown RBP11.45□□□□□ -0.58
VPS28-210ENST00000529182 STMN2Q93045 179 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 ATF6BQ99941 703 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 TMUB1Q9BVT8 246 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 GABARAPL3Q9BY60 117 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 ELOVL3Q9HB03 270 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 BARX1Q9HBU1 254 aaPredicted RBP11.45□□□□□ -0.58
VPS28-210ENST00000529182 ATPIF1Q9UII2 106 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 STARD10Q9Y365 291 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 MTORP42345 2549 aa11.45□□□□□ -0.58
VPS28-210ENST00000529182 CCDC182A6NF36 153 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ERICH4A6NGS2 130 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 H7C1Q1 480 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 PRODHO43272 600 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 TLX2O43763 284 aaPredicted RBP11.44□□□□□ -0.58
VPS28-210ENST00000529182 F12P00748 615 aaPredicted RBP11.44□□□□□ -0.58
VPS28-210ENST00000529182 CD99P14209 185 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ANOS1P23352 680 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 GCH1P30793 250 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ALDH3A2P51648 485 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 EFNA4P52798 201 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 BLVRAP53004 296 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 SELENOVP59797 346 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 TNK1Q13470 666 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 NKPD1Q17RQ9 610 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 KRTAP27-1Q3LI81 207 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ZNF718Q3SXZ3 478 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ZIK1Q3SY52 487 aaPredicted RBP11.44□□□□□ -0.58
VPS28-210ENST00000529182 TEX30Q5JUR7 227 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ARL9Q6T311 187 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 NAA40Q86UY6 237 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 TCEANCQ8N8B7 351 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ST7LQ8TDW4 575 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 SLAMF6Q96DU3 332 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 IL4I1Q96RQ9 567 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 INTS14Q96SY0 518 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 AMELYQ99218 206 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 SLC29A1Q99808 456 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 MARCH7Q9H992 704 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 CENPMQ9NSP4 180 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 TBCCD1Q9NVR7 557 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 USE1Q9NZ43 259 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ENOPH1Q9UHY7 261 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 ZANQ9Y493 2812 aa11.44□□□□□ -0.58
VPS28-210ENST00000529182 SMAD7O15105 426 aaKnown RBP11.43□□□□□ -0.58
VPS28-210ENST00000529182 IGHV3-13P01766 116 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 MRPL3P09001 348 aaKnown RBP11.43□□□□□ -0.58
VPS28-210ENST00000529182 ACSM4P0C7M7 580 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 NAA10P41227 235 aaPredicted RBP11.43□□□□□ -0.58
VPS28-210ENST00000529182 EFNB1P98172 346 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 EIF2B1Q14232 305 aaKnown RBP11.43□□□□□ -0.58
VPS28-210ENST00000529182 SLC35D3Q5M8T2 416 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 MBNL2Q5VZF2 373 aaKnown RBP11.43□□□□□ -0.58
VPS28-210ENST00000529182 UNQ6126/PRO20091Q6UXV3 157 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 DNM1P46Q6ZS02 220 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 TMEM163Q8TC26 289 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 DCLRE1CQ96SD1 692 aaKnown RBP11.43□□□□□ -0.58
VPS28-210ENST00000529182 PRRG3Q9BZD7 231 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 RAB1BQ9H0U4 201 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 DLL4Q9NR61 685 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 DDX28Q9NUL7 540 aaKnown RBP11.43□□□□□ -0.58
VPS28-210ENST00000529182 SLCO1C1Q9NYB5 712 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 PTTG3PQ9NZH4 202 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 MED13LQ71F56 2210 aa11.43□□□□□ -0.58
VPS28-210ENST00000529182 IGHV4-30-2A0A087WSY4 118 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 C5orf63A6NC05 138 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 M0R135 149 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 RRP9O43818 475 aaKnown RBP11.42□□□□□ -0.58
VPS28-210ENST00000529182 MAGEB1P43366 347 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 PRKXP51817 358 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 HCCSP53701 268 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 PRSS12P56730 875 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms