RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FAM71E2Q8N5Q1 922 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 SUMF2Q8NBJ7 301 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 ZNF738Q8NE65 137 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 OR56A1Q8NGH5 318 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 OR4C16Q8NGL9 310 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 OR1L6Q8NGR2 347 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 ARRDC2Q8TBH0 407 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 CASTOR1Q8WTX7 329 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 UBTD2Q8WUN7 234 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 HMGB4Q8WW32 186 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 ASB11Q8WXH4 323 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 DCUN1D4Q92564 292 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 NDRG1Q92597 394 aaKnown RBP5.24□□□□□ -1.57
CD44-225ENST00000527326 FRZBQ92765 325 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 KISS1RQ969F8 398 aaPredicted RBP5.24□□□□□ -1.57
CD44-225ENST00000527326 TOMM40LQ969M1 308 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 TMEM106AQ96A25 262 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 HAVCR1Q96D42 359 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 SPACA9Q96E40 222 aaPredicted RBP5.24□□□□□ -1.57
CD44-225ENST00000527326 C16orf58Q96GQ5 468 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 THOC3Q96J01 351 aaKnown RBP5.24□□□□□ -1.57
CD44-225ENST00000527326 AQP10Q96PS8 301 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 TRIB3Q96RU7 358 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 LYSMD1Q96S90 227 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 PDCD2LQ9BRP1 358 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 ZNF649Q9BS31 505 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 C20orf24Q9BUV8 137 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 MS4A8Q9BY19 250 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 WNT10AQ9GZT5 417 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 MAGT1Q9H0U3 335 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 PORCNQ9H237 461 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 TCEAL2Q9H3H9 227 aaPredicted RBP5.24□□□□□ -1.57
CD44-225ENST00000527326 POFUT1Q9H488 388 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 CNTD2Q9H8S5 307 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 IL21RQ9HBE5 538 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 FBXO34Q9NWN3 711 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 FKBP11Q9NYL4 201 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 OR5AC2Q9NZP5 309 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 MARCH4Q9P2E8 410 aaPredicted RBP5.24□□□□□ -1.57
CD44-225ENST00000527326 RHCGQ9UBD6 479 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 GULP1Q9UBP9 304 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 MTFP1Q9UDX5 166 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 SLC23A2Q9UGH3 650 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 SHPKQ9UHJ6 478 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 SMPXQ9UHP9 88 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 NAGKQ9UJ70 344 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 FBXW2Q9UKT8 454 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 MEMO1Q9Y316 297 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 ZFP37Q9Y6Q3 630 aaPredicted RBP5.24□□□□□ -1.57
CD44-225ENST00000527326 PARP14Q460N5 1801 aa5.24□□□□□ -1.57
CD44-225ENST00000527326 MYLKQ15746 1914 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 LOC105371242A0A075B767 164 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 TRBV4-1A0A0J9YWV2 114 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 C1orf226A1L170 272 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 CDHR4A6H8M9 788 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 C5orf51A6NDU8 294 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 PRAMEF25A6NGN4 478 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 RAB27BO00194 218 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 PEX12O00623 359 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 CDIPTO14735 213 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 P2RX6O15547 441 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 DOK2O60496 412 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 PRAMEF4O60810 478 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 NME6O75414 186 aaPredicted RBP5.23□□□□□ -1.57
CD44-225ENST00000527326 ERAL1O75616 437 aaKnown RBP5.23□□□□□ -1.57
CD44-225ENST00000527326 SCGNO76038 276 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 TNFSF15O95150 251 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 SYNGR4O95473 234 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 SNAI1O95863 264 aaPredicted RBP5.23□□□□□ -1.57
CD44-225ENST00000527326 ONECUT2O95948 504 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 OPN1SWP03999 348 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 SOD2P04179 222 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 GAPDHP04406 335 aaKnown RBP5.23□□□□□ -1.57
CD44-225ENST00000527326 PET100P0DJ07 73 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 OR12D1P0DN82 309 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 COX7A2P14406 83 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 TNFRSF1BP20333 461 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 TACR2P21452 398 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 AQP1P29972 269 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 NTF4P34130 210 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 GJA4P35212 333 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 TNFSF9P41273 254 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 PPICP45877 212 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 GPR4P46093 362 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 OR1E2P47887 323 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 OR3A2P47893 321 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 GLIPR1P48060 266 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 SLC6A11P48066 632 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 CX3CR1P49238 355 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 EFNA5P52803 228 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 STC1P52823 247 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 TAS2R20P59543 309 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 ERVFRD-1P60508 538 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 RPS13P62277 151 aaKnown RBP5.23□□□□□ -1.57
CD44-225ENST00000527326 HIST1H3AP68431 136 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 SLC35A1P78382 337 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 HMGCS1Q01581 520 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 MESP2Q0VG99 397 aa5.23□□□□□ -1.57
CD44-225ENST00000527326 ATXN7L3Q14CW9 347 aaPredicted RBP5.23□□□□□ -1.57
CD44-225ENST00000527326 OR7A5Q15622 319 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms