RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CLEC2DQ9UHP7 191 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 BLOC1S6Q9UL45 172 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 NBPF19A0A087WUL8 3843 aa13.29□□□□□ -0.28
LSM1-203ENST00000520755 DCHS2Q6V1P9 2916 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 FAM221AA4D161 298 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 ABCD4O14678 606 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 SGCEO43556 437 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 RGS10O43665 173 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 IGKV3-15P01624 115 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 IGLV1-44P01699 117 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 CECR9P0C854 216 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 ANOS1P23352 680 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 PTAFRP25105 342 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 CD40P25942 277 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 OPRL1P41146 370 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 PCBD1P61457 104 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 ROM1Q03395 351 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 HGFACQ04756 655 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 SPOCK1Q08629 439 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 RAB39AQ14964 217 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 RSPO1Q2MKA7 263 aaPredicted RBP13.28□□□□□ -0.28
LSM1-203ENST00000520755 KRTAP27-1Q3LI81 207 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 CDONQ4KMG0 1287 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 ELFN2Q5R3F8 820 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 ADAM5Q6NVV9 412 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 ZNF322Q6U7Q0 402 aaPredicted RBP13.28□□□□□ -0.28
LSM1-203ENST00000520755 LRRN1Q6UXK5 716 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 DPPA2Q7Z7J5 298 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 LHFPL3Q86UP9 236 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 STX19Q8N4C7 294 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 GJC3Q8NFK1 279 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 THEM6Q8WUY1 208 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 SLC7A6Q92536 515 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 MS4A3Q96HJ5 214 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 OR8B4Q96RC9 309 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 NR1H4Q96RI1 486 aaPredicted RBP13.28□□□□□ -0.28
LSM1-203ENST00000520755 ALG8Q9BVK2 526 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 ZNF696Q9H7X3 374 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 MOV10Q9HCE1 1003 aaKnown RBP13.28□□□□□ -0.28
LSM1-203ENST00000520755 INPP5EQ9NRR6 644 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 SLCO1C1Q9NYB5 712 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 PLEK2Q9NYT0 353 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 MRM2Q9UI43 246 aaKnown RBP13.28□□□□□ -0.28
LSM1-203ENST00000520755 EXOSC1Q9Y3B2 195 aaKnown RBP13.28□□□□□ -0.28
LSM1-203ENST00000520755 RNF115Q9Y4L5 304 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 PCDHGB1Q9Y5G3 927 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 TIMM10BQ9Y5J6 103 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 TMEM14AQ9Y6G1 99 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 CELSR2Q9HCU4 2923 aa13.28□□□□□ -0.28
LSM1-203ENST00000520755 DAPL1A0PJW8 107 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 ZNF878C9JN71 531 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 PHYHO14832 338 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 TMCC2O75069 709 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 TNFAIP8O95379 198 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 PLAUP00749 431 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 SMIM18P0DKX4 95 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 APEX1P27695 318 aaKnown RBP13.27□□□□□ -0.29
LSM1-203ENST00000520755 OTX1P32242 354 aaPredicted RBP13.27□□□□□ -0.29
LSM1-203ENST00000520755 GALEQ14376 348 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 OR2G6Q5TZ20 316 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 ZNF704Q6ZNC4 412 aaPredicted RBP13.27□□□□□ -0.29
LSM1-203ENST00000520755 PLEKHG7Q6ZR37 379 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 PRSS48Q7RTY5 328 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 FAM169BQ8N8A8 192 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 ZNF485Q8NCK3 441 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 KBTBD8Q8NFY9 601 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 MYDGFQ969H8 173 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 RNF166Q96A37 237 aaPredicted RBP13.27□□□□□ -0.29
LSM1-203ENST00000520755 ATF6BQ99941 703 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 KCNS3Q9BQ31 491 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 CDCA4Q9BXL8 241 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 HDHD2Q9H0R4 259 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 FBXL3Q9UKT7 428 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 LSM2Q9Y333 95 aaKnown RBP13.27□□□□□ -0.29
LSM1-203ENST00000520755 LRP12Q9Y561 859 aa13.27□□□□□ -0.29
LSM1-203ENST00000520755 LOC100509620A0A075B734 347 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 A0A1W2PPR1 153 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 PTHP01270 115 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 DBHP09172 617 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 HTR5AP47898 357 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 KRTAP10-9P60411 292 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 PLP2Q04941 152 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 EGR3Q06889 387 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 C3orf36Q3SXR2 165 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 TP53I3Q53FA7 332 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 RNLSQ5VYX0 342 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 ZNF773Q6PK81 442 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 SLC22A25Q6T423 547 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 PAQR4Q8N4S7 273 aaPredicted RBP13.26□□□□□ -0.29
LSM1-203ENST00000520755 OR1F12Q8NHA8 337 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 ASB17Q8WXJ9 295 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 RADILQ96JH8 1075 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 COQ7Q99807 217 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 ISG20L2Q9H9L3 353 aaKnown RBP13.26□□□□□ -0.29
LSM1-203ENST00000520755 ASH1LQ9NR48 2969 aaKnown RBP13.26□□□□□ -0.29
LSM1-203ENST00000520755 CENPMQ9NSP4 180 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 ACOXLQ9NUZ1 547 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 ATPIF1Q9UII2 106 aa13.26□□□□□ -0.29
LSM1-203ENST00000520755 HRNRQ86YZ3 2850 aaPredicted RBP13.26□□□□□ -0.29
LSM1-203ENST00000520755 CADP27708 2225 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms