RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 GID4Q8IVV7 300 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 TIGD4Q8IY51 512 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 PACRGLQ8N7B6 248 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 BBS1Q8NFJ9 593 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 OR5L1Q8NGL2 311 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 OR1J1Q8NGS3 322 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 SYNPRQ8TBG9 265 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 SPTSSAQ969W0 71 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 ZMYND19Q96E35 227 aaPredicted RBP12.28□□□□□ -0.44
NUP54-216ENST00000514901 MAP6Q96JE9 813 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 IL4I1Q96RQ9 567 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 DOK1Q99704 481 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 TOR3AQ9H497 397 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 DDX28Q9NUL7 540 aaKnown RBP12.28□□□□□ -0.44
NUP54-216ENST00000514901 IMPAD1Q9NX62 359 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 GPR160Q9UJ42 338 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 GRIP1Q9Y3R0 1128 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 TMEM129A0AVI4 362 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 E9PQ18 207 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 H7C417 338 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 GCH1P30793 250 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 SLC15A1P46059 708 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 ATP5J2P56134 94 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 TPTEP56180 551 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 PPP1CBP62140 327 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 TMED1Q13445 227 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 DPY19L4Q7Z388 723 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 ZNF101Q8IZC7 436 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 OR6N2Q8NGY6 317 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 ABHD4Q8TB40 342 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 CACNG6Q9BXT2 260 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 YIPF3Q9GZM5 350 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 OR51B6Q9H340 312 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 BARX1Q9HBU1 254 aaPredicted RBP12.27□□□□□ -0.45
NUP54-216ENST00000514901 PNRC2Q9NPJ4 139 aaKnown RBP12.27□□□□□ -0.45
NUP54-216ENST00000514901 SLCO1C1Q9NYB5 712 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 HAO2Q9NYQ3 351 aa12.27□□□□□ -0.45
NUP54-216ENST00000514901 OTOGQ6ZRI0 2925 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 CCDC182A6NF36 153 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 F5H5K5 113 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 CASQ2O14958 399 aaPredicted RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 ERCC1P07992 297 aaPredicted RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 CDKN1AP38936 164 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 RPS27P42677 84 aaKnown RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 PPOXP50336 477 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 KLF3P57682 345 aaPredicted RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 GRB2P62993 217 aaKnown RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 EIF2B1Q14232 305 aaKnown RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 GGTLC2Q14390 218 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 TAF13Q15543 124 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 TESK1Q15569 626 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 RSPO1Q2MKA7 263 aaPredicted RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 SLC25A30Q5SVS4 291 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 MBNL2Q5VZF2 373 aaKnown RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 SLC16A9Q7RTY1 509 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 OTOSQ8NHW6 89 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 FAM81AQ8TBF8 368 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 ST7LQ8TDW4 575 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 SLC7A6Q92536 515 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 RFKQ969G6 155 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 APOBEC3DQ96AK3 386 aaPredicted RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 SLAMF6Q96DU3 332 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 PERPQ96FX8 193 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 MARS2Q96GW9 593 aaKnown RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 MRPL37Q9BZE1 423 aaKnown RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 CENPMQ9NSP4 180 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 SMPD3Q9NY59 655 aaPredicted RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 WARS2Q9UGM6 360 aaKnown RBP12.26□□□□□ -0.45
NUP54-216ENST00000514901 DUSP13Q9UII6 198 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 GMPPBQ9Y5P6 360 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 TMEM14AQ9Y6G1 99 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 ITPR3Q14573 2671 aa12.26□□□□□ -0.45
NUP54-216ENST00000514901 IGLV3-9A0A075B6K5 115 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 LOC100130705A0A1B0GUX0 176 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 SNTNA6NMZ2 147 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 ZNF878C9JN71 531 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 H0YHG0 523 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 SLC16A6O15403 523 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 MPZL2O60487 215 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 NGFP01138 241 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 IGHV3-13P01766 116 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 APOC1P02654 83 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 DBHP09172 617 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 ACSM4P0C7M7 580 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 HTR1FP30939 366 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 LIPAP38571 399 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 SNRPGP62308 76 aaKnown RBP12.25□□□□□ -0.45
NUP54-216ENST00000514901 MSMPQ1L6U9 139 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 MEDAGQ5VYS4 303 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 SPNS3Q6ZMD2 512 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 RFPL4BQ6ZWI9 263 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 GALNT4Q8N4A0 578 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 ZNF555Q8NEP9 628 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 OR10S1Q8NGN2 331 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 SLC25A40Q8TBP6 338 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 KLF14Q8TD94 323 aaPredicted RBP12.25□□□□□ -0.45
NUP54-216ENST00000514901 RNF133Q8WVZ7 376 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 MBOAT4Q96T53 435 aa12.25□□□□□ -0.45
NUP54-216ENST00000514901 CNN2Q99439 309 aaKnown RBP12.25□□□□□ -0.45
NUP54-216ENST00000514901 MNTQ99583 582 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms