RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KLBQ86Z14 1044 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 OR13C2Q8NGS9 318 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 TMIGD2Q96BF3 282 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 TMEM120AQ9BXJ8 343 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 TRIM36Q9NQ86 728 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 FAM32AQ9Y421 112 aaKnown RBP17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 TRAV40A0A0B4J280 105 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 H7C1C5 153 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 PHYHO14832 338 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 NDUFB2O95178 105 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 ZNF682O95780 498 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 SDHAP31040 664 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 PITPNBP48739 271 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 NPY4RP50391 375 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 RPS6KA3P51812 740 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 LCN6P62502 163 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 KRR1Q13601 381 aaKnown RBP17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 TUSC1Q2TAM9 212 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 PDLIM3Q53GG5 364 aaPredicted RBP17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 TMEM255AQ5JRV8 349 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 KLF17Q5JT82 389 aaPredicted RBP17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 TMPRSS11FQ6ZWK6 438 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 OR5AS1Q8N127 324 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 LRRC75AQ8NAA5 344 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 MEGF10Q96KG7 1140 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 SIGLEC11Q96RL6 698 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 NMNAT1Q9HAN9 279 aaPredicted RBP17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 NOX4Q9NPH5 578 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 TMEM100Q9NV29 134 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 ARGLU1Q9NWB6 273 aaPredicted RBP17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 PTTG3PQ9NZH4 202 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 MMP24Q9Y5R2 645 aa17.65■□□□□ 0.42
SQSTM1-210ENST00000506042 ENSAO43768 121 aaKnown RBP17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 SLC16A7O60669 478 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 GPANK1O95872 356 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 CD80P33681 288 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 CENPAP49450 140 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 RPL15P61313 204 aaKnown RBP17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 SEC61A1P61619 476 aaKnown RBP17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 Q6ZR03 302 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 DCDC5Q6ZRR9 648 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 BCL6BQ8N143 479 aaPredicted RBP17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 FAM71F1Q96KD3 344 aaPredicted RBP17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 COQ7Q99807 217 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 SLC22A4Q9H015 551 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 DCAF16Q9NXF7 216 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 AURKCQ9UQB9 309 aa17.64■□□□□ 0.41
SQSTM1-210ENST00000506042 TIMM23O14925 209 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 KCNAB3O43448 404 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 PLATP00750 562 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 LIPFP07098 398 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 DEFA6Q01524 100 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 ECH1Q13011 328 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 PDCD1Q15116 288 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 SLC36A3Q495N2 470 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 HDXQ7Z353 690 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 CELF2-AS1Q8N7Q2 184 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 OR10AD1Q8NGE0 317 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 Q96M85 177 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 NUDT16L1Q9BRJ7 211 aaKnown RBP17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 SYT4Q9H2B2 425 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 RHCGQ9UBD6 479 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 ADAM18Q9Y3Q7 739 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 CAPN7Q9Y6W3 813 aa17.63■□□□□ 0.41
SQSTM1-210ENST00000506042 KIR2DS1A0A191URI9 304 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 IQCF6A8MYZ5 107 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 M0QZ24 198 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 FXYD1O00168 92 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 SLC22A2O15244 555 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 GMNNO75496 209 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 FPR3P25089 353 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 GPR4P46093 362 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 YAP1P46937 504 aaKnown RBP17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 KLF10Q13118 480 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 ZNF404Q494X3 552 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 SPRNQ5BIV9 151 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 MESTQ5EB52 335 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 OR2T2Q6IF00 324 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 TMEM86BQ8N661 226 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 CDADC1Q9BWV3 514 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 TMEM165Q9HC07 324 aa17.62■□□□□ 0.41
SQSTM1-210ENST00000506042 ARHGAP32A7KAX9 2087 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 CYB5R3P00387 301 aaPredicted RBP17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 CTLA4P16410 223 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 MZT1Q08AG7 82 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 KRT72Q14CN4 511 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 OCLNQ16625 522 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 MIDNQ504T8 468 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 MOGAT3Q86VF5 341 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 OR2AJ1Q8NGZ0 328 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 ZNF420Q8TAQ5 688 aaPredicted RBP17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 ZNF48Q96MX3 618 aaPredicted RBP17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 TMEM246Q9BRR3 403 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 ERVK-18Q9QC07 812 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 RPS6KA6Q9UK32 745 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 COA3Q9Y2R0 106 aaPredicted RBP17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 POMT1Q9Y6A1 747 aa17.61■□□□□ 0.41
SQSTM1-210ENST00000506042 A0A087WUU8 490 aa17.6■□□□□ 0.41
SQSTM1-210ENST00000506042 LOC100653049A0A140TA62 436 aa17.6■□□□□ 0.41
SQSTM1-210ENST00000506042 SRRM5B3KS81 715 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms