RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CHATP28329 748 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 CLDN8P56748 225 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 MYBPC1Q00872 1141 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 NAAAQ02083 359 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 EMX2Q04743 252 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 BAMBIQ13145 260 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 LASP1Q14847 261 aaKnown RBP3.28□□□□□ -1.88
USP54-217ENST00000498213 TRIP10Q15642 601 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 ADIPOQQ15848 244 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 XKR7Q5GH72 579 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 ZFAND6Q6FIF0 208 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 TMEM225Q6GV28 225 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 ACSM5Q6NUN0 579 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 CBLN3Q6UW01 205 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 CASP12Q6UXS9 341 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 LRRC74BQ6ZQY2 392 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 MSANTD1Q6ZTZ1 278 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 C9orf139Q6ZV77 190 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 AAED1Q7RTV5 226 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 C16orf62Q7Z3J2 963 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 HDDC2Q7Z4H3 204 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 GPAT4Q86UL3 456 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 RIMKLAQ8IXN7 391 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 PEX5LQ8IYB4 626 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 ZNF563Q8TA94 476 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 VANGL1Q8TAA9 524 aaPredicted RBP3.28□□□□□ -1.88
USP54-217ENST00000498213 NANPQ8TBE9 248 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 FNDC8Q8TC99 324 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 DNAJA4Q8WW22 397 aaPredicted RBP3.28□□□□□ -1.88
USP54-217ENST00000498213 PIK3R3Q92569 461 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 CDS1Q92903 461 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 LRRC58Q96CX6 371 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 NEURL3Q96EH8 262 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 TIMD4Q96H15 378 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 C1orf147Q96MC9 270 aaPredicted RBP3.28□□□□□ -1.88
USP54-217ENST00000498213 ZNF570Q96NI8 536 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 UHRF2Q96PU4 802 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 TMEM109Q9BVC6 243 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 NOX4Q9NPH5 578 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 B3GAT2Q9NPZ5 323 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 EQTNQ9NQ60 294 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 NPAP1Q9NZP6 1156 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 TMEM216Q9P0N5 145 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 PEMTQ9UBM1 199 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 IL20RAQ9UHF4 553 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 SLC7A8Q9UHI5 535 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 CLEC4AQ9UMR7 237 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 IFT52Q9Y366 437 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 CMAHPQ9Y471 501 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 WDR45Q9Y484 360 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 POLR3HQ9Y535 204 aaPredicted RBP3.28□□□□□ -1.88
USP54-217ENST00000498213 DNAJC15Q9Y5T4 150 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 A3GALT2U3KPV4 340 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 LYSTQ99698 3801 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 DNAH3Q8TD57 4116 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 A0A0G2JPF8 293 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 CBY3A6NI87 242 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 LIPT2A6NK58 231 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 FAM90A7PA6NKC0 464 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 FAM90A22PA8MWA6 464 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 FAM90A12PA8MX19 464 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 ZNF99A8MXY4 864 aaPredicted RBP3.27□□□□□ -1.89
USP54-217ENST00000498213 FAM90A23PA8MXZ1 464 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 HNRNPCL3B7ZW38 293 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 NPIPB11E5RHQ5 1161 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 ATP6V1G2-DDX39BF2Z307 99 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 G3V2L1 256 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 M0R1B8 84 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 WNT9BO14905 357 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 PIP5K1CO60331 668 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 PLIN3O60664 434 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 HNRNPCL1O60812 293 aaKnown RBP3.27□□□□□ -1.89
USP54-217ENST00000498213 NPIPB7O75200 414 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 UGT2B17O75795 530 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 UBL3O95164 117 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 H6PDO95479 791 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 KRT75O95678 551 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 SNAP29O95721 258 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 IGF2P01344 180 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 TFPTP0C1Z6 253 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 ZCCHC18P0CG32 403 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 HNRNPCL4P0DMR1 293 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 PNMTP11086 282 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 SELEP16581 610 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 ZNF43P17038 809 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 RPS4Y1P22090 263 aaKnown RBP3.27□□□□□ -1.89
USP54-217ENST00000498213 CXCR1P25024 350 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 RYKP34925 604 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 ZNF83P51522 516 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 MAGOHP61326 146 aaKnown RBP3.27□□□□□ -1.89
USP54-217ENST00000498213 RPL38P63173 70 aaKnown RBP3.27□□□□□ -1.89
USP54-217ENST00000498213 TAF11Q15544 211 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 KRT71Q3SY84 523 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 LIN52Q52LA3 116 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.27□□□□□ -1.89
USP54-217ENST00000498213 PDZK1Q5T2W1 519 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 SERTAD4-AS1Q5TG53 156 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 AGBL2Q5U5Z8 902 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 FAM91A1Q658Y4 838 aa3.27□□□□□ -1.89
USP54-217ENST00000498213 OLFML2AQ68BL7 652 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms