RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TRBV11-1A0A0K0K1C0 115 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 TMEM82A0PJX8 343 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 HEXBP07686 556 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 AKAIN1P0CW23 69 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 CALCBP10092 127 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 AKR1C4P17516 323 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 PRKACAP17612 351 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 PI3P19957 117 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 FAUP35544 74 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 SLC18B1Q6NT16 456 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 ZNF679Q8IYX0 411 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 NUDCD2Q8WVJ2 157 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 MARC2Q969Z3 335 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 LRRC46Q96FV0 321 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 C12orf10Q9HB07 376 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 MRPS17Q9Y2R5 130 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 EML6Q6ZMW3 1958 aa14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 COL5A1P20908 1838 aaPredicted RBP14.77□□□□□ -0.05
CCDC88B-210ENST00000494566 ADAMTS20P59510 1910 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 ATP1B3P54709 279 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 ZNF273Q14593 569 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 MYO7BQ6PIF6 2116 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 TMEM185AQ8NFB2 350 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 MCHR2Q969V1 340 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 MRPS24Q96EL2 167 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 RADILQ96JH8 1075 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 MS4A18H0YCH9 400 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 HLA-AP01891 365 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 CAPZA1P52907 286 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 FOXF1Q12946 379 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 GFOD2Q3B7J2 385 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 MS4A18Q3C1V0 323 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 CDNFQ49AH0 187 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 ANKRD37Q7Z713 158 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 OR2I1PQ8NGU4 316 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 LHFPL5Q8TAF8 219 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 SLC25A44Q96H78 314 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 SLC6A7Q99884 636 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 DHDHQ9UQ10 334 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 MT-ATP6P00846 226 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 CPN1P15169 458 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 GNALP38405 381 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 RASGEF1BQ0VAM2 473 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 NKAIN1Q4KMZ8 207 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 PTCRAQ6ISU1 281 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 DCXRQ7Z4W1 244 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 BPIFB2Q8N4F0 458 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 C12orf45Q8N5I9 185 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 ROBO4Q8WZ75 1007 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 SHARPINQ9H0F6 387 aa14.76□□□□□ -0.05
CCDC88B-210ENST00000494566 TOR1AO14656 332 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 C4BPBP20851 252 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 CSRP1P21291 193 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 RPL35P42766 123 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 ANKRD16Q6P6B7 361 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 PAPD4Q6PIY7 484 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 TMPPEQ6ZT21 453 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 CDH26Q8IXH8 852 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 MARVELD3Q96A59 401 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 C5orf34Q96MH7 638 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 ASF1BQ9NVP2 202 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 KLRF1Q9NZS2 232 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 FTCDNL1E5RQL4 147 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 DHPSP49366 369 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 SLC26A5P58743 744 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 GMFBP60983 142 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 LY6G6FQ5SQ64 297 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 FOXRED2Q8IWF2 684 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 BPIFCQ8NFQ6 507 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 RNF128Q8TEB7 428 aa14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 CPNE2Q96FN4 548 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 VRK1Q99986 396 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 ZNF768Q9H5H4 540 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-210ENST00000494566 A0A1W2PQM1 296 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 D6RAR5 112 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 GPR31O00270 319 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 P2RY10O00398 339 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 SCRG1O75711 98 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 SLC2A1P11166 492 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 NAGAP17050 411 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 RIDAP52758 137 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 ASB5Q8WWX0 329 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 VSX1Q9NZR4 365 aaPredicted RBP14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 OR5H14A6NHG9 310 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 TMEM200CA6NKL6 621 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 SNRPGP15A8MWD9 76 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 NPIPA5E9PKD4 350 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 CTRB1P17538 263 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 MC2RQ01718 297 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 GLO1Q04760 184 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 DHRS2Q13268 280 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 CTRB2Q6GPI1 263 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 SPEM1Q8N4L4 309 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 PLPP5Q8NEB5 264 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 PXT1Q8NFP0 134 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 DNASE2BQ8WZ79 361 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 SEH1LQ96EE3 360 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 CMTM3Q96MX0 182 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 NPIPA1Q9UND3 350 aa14.74□□□□□ -0.05
CCDC88B-210ENST00000494566 EXPH5Q8NEV8 1989 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms